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ivan.molineris
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@ivanmolineris-20126
Last seen 5.5 years ago
I have a vcf file, I annotate that file whit annovar and in the resulting txt file I have this row
chr7 140453136 140453137 AC TT exonic BRAF . nonframeshift substitution BRAF:NM_004333:exon15:c.1798_1799AA:p.V600K
If I convert the txt file in maf using annovarToMaf function of maftools package I obtain NA as Variant_Classification. What is instead the correct classification in maf files for this kind of variants?
