Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
annotation
•
reset
0
votes
0
replies
91
views
Best method for annotating distal peaks
ChIPSeq
annotation
ChIPpeakAnno
5 weeks ago
nilanjanamani88
• 0
0
votes
5
replies
2.0k
views
Normalizing Affy Almac Xcel Array Data from CEL files
Annotation
affy
oligo
ffpe
Annotation
affy
oligo
ffpe
written 10.2 years ago by
Guest User
★ 13k
5
votes
11
replies
4.1k
views
How to annotate gene names for genomic coordinates?
annotation
written 8.7 years ago by
seeker
• 0
0
votes
1
reply
385
views
Create design matrix for differential methylation analysis
Annotation
annotate
DifferentialMethylation
minfiDataEPIC
updated 5 months ago by
Basti
▴ 750 • written 5 months ago by
titangerd
• 0
1
vote
0
replies
312
views
News:
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0
release
Annotation
5 months ago
kayla.interdonato
▴ 160
0
votes
1
reply
2.9k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
Aytaç
• 0
3
votes
4
replies
612
views
Questions Trying to Re-create MicroArray Data (GSE97562) (Fig. 2)
MicroRNAArrayData
GSE97562
pd.hugene.1.0.st.v1
Annotation
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
rodj5201
• 0
2
votes
4
replies
828
views
Use with_go along with other filters in getBM function
Annotation
biomaRt
9 months ago
RuBBiT0
▴ 10
0
votes
2
replies
613
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest
ChAMP
annotation
updated 10 months ago by
James W. MacDonald
65k • written 10 months ago by
Matilda
• 0
0
votes
4
replies
1.1k
views
BioCann repository index warning on Apple Silicon (Bioc 3.17 / R 4.3)
Annotation
10 months ago
Michael Steinbaugh
▴ 90
0
votes
0
replies
464
views
AnnotationDbi Error: PROSITE is defunct.
ChipDb
AnnotationDbi
Annotation
11 months ago
ahiser
• 0
0
votes
3
replies
647
views
Annotated dendogram (tree) from tbl_graph
dendogram
ggtreeExtra
ggtree
annotation
Annotation
11 months ago
christian.dina
• 0
0
votes
0
replies
571
views
News:
Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release
db0
Annotation
12 months ago
kayla.interdonato
▴ 160
2
votes
1
reply
483
views
Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData
Annotation
GEOdata
updated 13 months ago by
James W. MacDonald
65k • written 13 months ago by
Michele Claire
• 0
0
votes
1
reply
733
views
Create an Annotation DB file for a non-model organism
AnnotationDbi
annotation
ChIPseeker
updated 13 months ago by
James W. MacDonald
65k • written 13 months ago by
L
▴ 50
3
votes
3
replies
965
views
Is ther an annotation package for sheep (Ovis aries)
sheep
database_package
Annotation
updated 13 months ago by
Guido Hooiveld
★ 3.9k • written 13 months ago by
priscilaramosibeas
▴ 10
0
votes
1
reply
501
views
Bioconductor tool for curating annotations?
Annotation
updated 13 months ago by
Lluís Revilla Sancho
▴ 730 • written 13 months ago by
Charles Plessy
▴ 180
3
votes
2
replies
1.9k
views
I cannot install annotables package in Rstudio (macOS)
DESeq2
PackageTypeData
package
Annotation
13 months ago
m-bihie
▴ 10
1
vote
9
replies
1.2k
views
Is it possible to annotate a GRanges Object that has scaffolding names and not chromosome numbers?
Annotation
updated 14 months ago by
James W. MacDonald
65k • written 14 months ago by
stacy.genovese
• 0
0
votes
3
replies
828
views
A look inside annotation packages
Annotation
15 months ago
Ed Siefker
▴ 230
1
vote
2
replies
6.0k
views
How to convert Illumina HT_12_v4 annotation
convert
R
annotation
microarray
illumina human ht-12 v4
updated 15 months ago by
snijesh
▴ 20 • written 6.3 years ago by
p_donchev84
• 0
2
votes
3
replies
1.6k
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal
ensembldb
rtracklayer
Annotation
updated 14 months ago by
rbj
• 0 • written 16 months ago by
Jake
▴ 10
0
votes
5
replies
1.9k
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R
ensembldb
Annotation
updated 17 months ago by
Guido Hooiveld
★ 3.9k • written 17 months ago by
Mohamed
▴ 30
0
votes
0
replies
573
views
News:
Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release
db0
annotation
17 months ago
kayla.interdonato
▴ 160
0
votes
1
reply
561
views
Annotation data packages for plant parasitic nematodes
AnnotationData
Annotation
updated 18 months ago by
James W. MacDonald
65k • written 18 months ago by
Hassanaly
• 0
1
vote
3
replies
1.4k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation
GeneOntology
topGO
GO
updated 21 months ago by
James W. MacDonald
65k • written 21 months ago by
Raito92
▴ 60
0
votes
1
reply
751
views
News:
Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation
release
db0
23 months ago
kayla.interdonato
▴ 160
0
votes
0
replies
579
views
low mapping between annotated genome and transcriptome
transcriptome
Annotation
mapping
23 months ago
Ava
• 0
0
votes
1
reply
722
views
peak annotation
ChIPpeakAnno
Annotation
updated 23 months ago by
Kai Hu
▴ 70 • written 2.0 years ago by
Bogdan
▴ 670
0
votes
0
replies
621
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware
GOSemSim
annotation
2.1 years ago
Amandeep
• 0
0
votes
1
reply
1.0k
views
SNP annotation
SNPRelate
SNP
GWASTools
Annotation
GWASdata
updated 2.2 years ago by
Stephanie M. Gogarten
▴ 870 • written 2.3 years ago by
Adrián
• 0
0
votes
1
reply
1.2k
views
How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?
reactomePA
package
annotation
updated 2.2 years ago by
shepherl
3.8k • written 2.2 years ago by
mathavanbioinfo
▴ 20
0
votes
0
replies
649
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation
annotatr
2.3 years ago
Ahdee
▴ 50
0
votes
2
replies
1.7k
views
getBM error in the biomaRt R package
Annotation
updated 19 months ago by
qiz218591
• 0 • written 2.3 years ago by
arungowda9738
• 0
0
votes
1
reply
898
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation
biomaRt
ensembldb
written 2.3 years ago by
Lillian
• 0
0
votes
0
replies
744
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process
annotationTools
AnnotationFilter
Annotation
biomaRt
2.3 years ago
Shane
• 0
0
votes
1
reply
782
views
Issue with annotation package mouse4302.db
mouse4302.db
annotation
updated 2.4 years ago by
James W. MacDonald
65k • written 2.4 years ago by
surajit
• 0
1
vote
1
reply
1.5k
views
Is there any R package for filtering out SNP markers?
Tutorial
annotation
updated 2.5 years ago by
Kevin Blighe
★ 3.9k • written 4.6 years ago by
prodhan82
▴ 20
0
votes
1
reply
670
views
anotacion para Anopheles Albimanus
anopheles_albimanus
Annotation
updated 2.5 years ago by
shepherl
3.8k • written 2.5 years ago by
Fernanda
• 0
3
votes
1
reply
2.0k
views
Converting between UCSC id and gene symbol with bioconductor annotation resources
AnnotationData
AnnotationDbi
annotation
updated 2.5 years ago by
James W. MacDonald
65k • written 2.5 years ago by
kstachelek
• 0
1
vote
1
reply
1.9k
views
ComplexHeatmap: Not able to change the annotations size of the heatmap
ComplexHeatmap
Anno
Annotation
updated 2.5 years ago by
Zuguang Gu
▴ 240 • written 2.5 years ago by
Ashish Jain
▴ 10
1
vote
2
replies
2.5k
views
mapping mouse ENSEMBL ids to human gene symbol
Annotation
AnnotationDbi
annotate
updated 2.7 years ago by
James W. MacDonald
65k • written 2.7 years ago by
cosomol999
• 0
5
votes
10
replies
2.0k
views
How to do annotation with Limma
annotation
limma
updated 2.8 years ago by
Guido Hooiveld
★ 3.9k • written 2.8 years ago by
1gagoogag1
• 0
1
vote
2
replies
1.4k
views
trouble with ENSEMBL ids for Org.Ss.eg.db
Annotation
org.Ss.eg.db
AnnotationDbi
2.8 years ago
carine.genet
• 0
3
votes
9
replies
5.0k
views
LOC gene IDs for characterised genes in annotation files
Annotation
RNAseq
updated 2.1 years ago by
Lan
• 0 • written 2.9 years ago by
Chris
• 0
1
vote
0
replies
790
views
News:
Bioconductor 3.13 db0s, OrgDbs and TxDbs now available
annotation
release
db0
2.9 years ago
kayla.interdonato
▴ 160
6
votes
2
replies
1.5k
views
how can I annotate my scRNAseq clusters from a Rat experiment?
scRNAseq
Rattus_norvegicus_Data
annotation
updated 2.9 years ago by
ATpoint
★ 3.9k • written 2.9 years ago by
pcantalupo
• 0
0
votes
9
replies
1.7k
views
The GO annotation of fugal species outside of 20 model organisms is outdated
GO
biomartr
annotation
ensemble
fungi
updated 2.9 years ago by
James W. MacDonald
65k • written 2.9 years ago by
Bettina
• 0
2
votes
1
reply
880
views
Geno Ontology Analysis using gene symbol
GO.db
Annotation
Clusterprofile
GeneOntology
updated 3.0 years ago by
Basti
▴ 750 • written 3.0 years ago by
MOHAMMAD
• 0
0
votes
2
replies
1.7k
views
Annotation for Macaca fascicularis
Macaca_fascicularis
annotation
updated 3.1 years ago by
James W. MacDonald
65k • written 3.1 years ago by
Eva
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: DEG Filtering
by
Gordon Smyth
50k
RMA normalization is good but batch correction using NOISeq isn't right. Data shouldn't be batch corrected before the limma analysis and NO…
Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
Yes, that is a quote from [A guide to creating design matrices for gene expression experiments](https://bioconductor.org/packages/release/w…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
Votes
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
C: How to check that the reads in two fastq files are in the same order
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Awards
• All
Scholar
to
Gordon Smyth
50k
Popular Question
to
rocanja
▴ 60
Popular Question
to
rproendo
▴ 20
Popular Question
to
Wolfgang RAFFELSBERGER
▴ 140
Popular Question
to
Dario Strbenac
★ 1.5k
Locations
• All
UPF, Barcelona, Spain,
just now
India,
16 minutes ago
WEHI, Melbourne, Australia,
22 minutes ago
United States,
27 minutes ago
United States,
30 minutes ago
Traffic: 697 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6