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Showing :
annotation
•
reset
1
vote
2
replies
633
views
Struggling to convert a large list of non-model genes into human orthologs, any suggestions?
annotation
29 days ago • updated 25 days ago
ronin
• 0
2
votes
2
replies
262
views
Get gene symbols for a set of hg19 coordinates
annotation
hg19
9 weeks ago
pcantalupo
▴ 10
0
votes
6
replies
519
views
unable to access Annotationhub latest record
DNAMethylation
AnnotationHub
EPICv2manifest
annotation
updated 3 months ago by
Tim Peters
▴ 190 • written 3 months ago by
s.malik
• 0
2
votes
1
reply
405
views
Only positive enrichment score in GSEA
clusterProfiler
annotation
gseGO
gsea
OrgDb
updated 4 months ago by
Guido Hooiveld
★ 4.0k • written 4 months ago by
enee
▴ 10
0
votes
0
replies
330
views
Best method for annotating distal peaks
ChIPSeq
annotation
ChIPpeakAnno
5 months ago
nilanjanamani88
• 0
0
votes
5
replies
2.1k
views
Normalizing Affy Almac Xcel Array Data from CEL files
Annotation
affy
oligo
ffpe
Annotation
affy
oligo
ffpe
written 10.6 years ago by
Guest User
★ 13k
5
votes
11
replies
4.4k
views
How to annotate gene names for genomic coordinates?
annotation
written 9.1 years ago by
seeker
• 0
0
votes
1
reply
602
views
Create design matrix for differential methylation analysis
Annotation
annotate
DifferentialMethylation
minfiDataEPIC
updated 10 months ago by
Basti
▴ 780 • written 10 months ago by
titangerd
• 0
1
vote
0
replies
615
views
News:
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0
release
Annotation
10 months ago
kayla.interdonato
▴ 160
0
votes
1
reply
4.5k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
updated 10 months ago by
James W. MacDonald
66k • written 10 months ago by
Aytaç
• 0
3
votes
4
replies
812
views
Questions Trying to Re-create MicroArray Data (GSE97562) (Fig. 2)
MicroRNAArrayData
GSE97562
pd.hugene.1.0.st.v1
Annotation
updated 12 months ago by
James W. MacDonald
66k • written 12 months ago by
rodj5201
• 0
2
votes
4
replies
1.1k
views
Use with_go along with other filters in getBM function
Annotation
biomaRt
14 months ago
RuBBiT0
▴ 10
0
votes
2
replies
895
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest
ChAMP
annotation
updated 14 months ago by
James W. MacDonald
66k • written 14 months ago by
Matilda
• 0
0
votes
4
replies
1.4k
views
BioCann repository index warning on Apple Silicon (Bioc 3.17 / R 4.3)
Annotation
14 months ago
Michael Steinbaugh
▴ 90
0
votes
0
replies
632
views
AnnotationDbi Error: PROSITE is defunct.
ChipDb
AnnotationDbi
Annotation
16 months ago • updated 15 months ago
ahiser
• 0
0
votes
3
replies
822
views
Annotated dendogram (tree) from tbl_graph
dendogram
ggtreeExtra
ggtree
annotation
Annotation
16 months ago
christian.dina
• 0
0
votes
0
replies
796
views
News:
Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release
db0
Annotation
16 months ago
kayla.interdonato
▴ 160
2
votes
1
reply
600
views
Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData
Annotation
GEOdata
updated 17 months ago by
James W. MacDonald
66k • written 17 months ago by
Michele Claire
• 0
0
votes
1
reply
966
views
Create an Annotation DB file for a non-model organism
AnnotationDbi
annotation
ChIPseeker
updated 17 months ago by
James W. MacDonald
66k • written 17 months ago by
L
▴ 50
3
votes
3
replies
1.3k
views
Is ther an annotation package for sheep (Ovis aries)
sheep
database_package
Annotation
updated 17 months ago by
Guido Hooiveld
★ 4.0k • written 18 months ago by
priscilaramosibeas
▴ 10
0
votes
1
reply
598
views
Bioconductor tool for curating annotations?
Annotation
updated 18 months ago by
Lluís Revilla Sancho
▴ 730 • written 18 months ago by
Charles Plessy
▴ 180
3
votes
2
replies
2.4k
views
I cannot install annotables package in Rstudio (macOS)
DESeq2
PackageTypeData
package
Annotation
18 months ago
m-bihie
▴ 10
1
vote
9
replies
1.5k
views
Is it possible to annotate a GRanges Object that has scaffolding names and not chromosome numbers?
Annotation
updated 18 months ago by
James W. MacDonald
66k • written 18 months ago by
stacy.genovese
• 0
0
votes
3
replies
974
views
A look inside annotation packages
Annotation
19 months ago
Ed Siefker
▴ 230
1
vote
2
replies
6.6k
views
How to convert Illumina HT_12_v4 annotation
convert
R
annotation
microarray
illumina human ht-12 v4
updated 19 months ago by
snijesh
▴ 20 • written 6.6 years ago by
p_donchev84
• 0
2
votes
3
replies
1.9k
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal
ensembldb
rtracklayer
Annotation
updated 18 months ago by
rbj
• 0 • written 20 months ago by
Jake
▴ 10
0
votes
5
replies
2.3k
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R
ensembldb
Annotation
updated 21 months ago by
Guido Hooiveld
★ 4.0k • written 21 months ago by
Mohamed
▴ 30
0
votes
0
replies
714
views
News:
Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release
db0
annotation
22 months ago
kayla.interdonato
▴ 160
0
votes
1
reply
651
views
Annotation data packages for plant parasitic nematodes
AnnotationData
Annotation
updated 22 months ago by
James W. MacDonald
66k • written 22 months ago by
Hassanaly
• 0
1
vote
3
replies
2.0k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation
GeneOntology
topGO
GO
updated 2.1 years ago by
James W. MacDonald
66k • written 2.1 years ago by
Raito92
▴ 60
0
votes
1
reply
925
views
News:
Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation
release
db0
2.3 years ago
kayla.interdonato
▴ 160
0
votes
0
replies
677
views
low mapping between annotated genome and transcriptome
transcriptome
Annotation
mapping
2.3 years ago
Ava
• 0
0
votes
1
reply
920
views
peak annotation
ChIPpeakAnno
Annotation
updated 2.3 years ago by
Kai Hu
▴ 70 • written 2.4 years ago by
Bogdan
▴ 670
0
votes
0
replies
773
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware
GOSemSim
annotation
2.5 years ago
Amandeep
• 0
0
votes
1
reply
1.2k
views
SNP annotation
SNPRelate
SNP
GWASTools
Annotation
GWASdata
updated 2.5 years ago by
Stephanie M. Gogarten
▴ 870 • written 2.7 years ago by
Adrián
• 0
0
votes
1
reply
1.4k
views
How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?
reactomePA
package
annotation
updated 2.5 years ago by
shepherl
3.9k • written 2.5 years ago by
mathavanbioinfo
▴ 20
0
votes
0
replies
774
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation
annotatr
2.6 years ago
Ahdee
▴ 50
0
votes
2
replies
2.2k
views
getBM error in the biomaRt R package
Annotation
updated 23 months ago by
qiz218591
• 0 • written 2.7 years ago by
arungowda9738
• 0
0
votes
1
reply
1.1k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation
biomaRt
ensembldb
written 2.7 years ago by
Lillian
• 0
0
votes
0
replies
899
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process
annotationTools
AnnotationFilter
Annotation
biomaRt
2.7 years ago
Shane
• 0
0
votes
1
reply
940
views
Issue with annotation package mouse4302.db
mouse4302.db
annotation
updated 2.7 years ago by
James W. MacDonald
66k • written 2.7 years ago by
surajit
• 0
1
vote
1
reply
1.6k
views
Is there any R package for filtering out SNP markers?
Tutorial
annotation
updated 2.8 years ago by
Kevin Blighe
★ 4.0k • written 5.0 years ago by
prodhan82
▴ 20
0
votes
1
reply
762
views
anotacion para Anopheles Albimanus
anopheles_albimanus
Annotation
updated 2.9 years ago by
shepherl
3.9k • written 2.9 years ago by
Fernanda
• 0
3
votes
1
reply
2.4k
views
Converting between UCSC id and gene symbol with bioconductor annotation resources
AnnotationData
AnnotationDbi
annotation
updated 2.9 years ago by
James W. MacDonald
66k • written 2.9 years ago by
kstachelek
• 0
1
vote
1
reply
2.3k
views
ComplexHeatmap: Not able to change the annotations size of the heatmap
ComplexHeatmap
Anno
Annotation
updated 2.9 years ago by
Zuguang Gu
▴ 280 • written 2.9 years ago by
Ashish Jain
▴ 10
1
vote
2
replies
2.8k
views
mapping mouse ENSEMBL ids to human gene symbol
Annotation
AnnotationDbi
annotate
updated 3.0 years ago by
James W. MacDonald
66k • written 3.0 years ago by
cosomol999
• 0
5
votes
10
replies
2.3k
views
How to do annotation with Limma
annotation
limma
updated 3.1 years ago by
Guido Hooiveld
★ 4.0k • written 3.1 years ago by
1gagoogag1
• 0
1
vote
2
replies
1.6k
views
trouble with ENSEMBL ids for Org.Ss.eg.db
Annotation
org.Ss.eg.db
AnnotationDbi
3.1 years ago
carine.genet
• 0
3
votes
9
replies
5.6k
views
LOC gene IDs for characterised genes in annotation files
Annotation
RNAseq
updated 2.5 years ago by
Lan
• 0 • written 3.2 years ago by
Chris
• 0
1
vote
0
replies
877
views
News:
Bioconductor 3.13 db0s, OrgDbs and TxDbs now available
annotation
release
db0
3.2 years ago
kayla.interdonato
▴ 160
50 results • Page
1 of 1
Recent ...
Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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