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czw814
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@czw814-20437
Last seen 6.0 years ago
To whom it may concern,
I'm unable to install XCMS (release38) because mzR can not be loaded
install_github(repo="sneumann/xcms",ref="RELEASE_3_8")
Return:
Error: package or namespace load failed for 'mzR':
.onLoad failed in loadNamespace() for 'mzR', details:
call: fun(libname, pkgname)
error: (converted from warning) mzR has been built against a different Rcpp version (1.0.0)
than is installed on your system (1.0.1). This might lead to errors
when loading mzR. If you encounter such issues, please send a report,
including the output of sessionInfo() to the Bioc support forum at
https://support.bioconductor.org/. For details see also
https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue.
Error : package 'mzR' could not be loaded
session info:
- Session info -------------------------------------------------------------------------------------
setting value
version R version 3.5.3 (2019-03-11)
os Windows >= 8 x64
system x86_64, mingw32
ui RStudio
language (EN)
collate English_United Kingdom.1252
ctype English_United Kingdom.1252
tz Europe/Paris
date 2019-04-07
- Packages -----------------------------------------------------------------------------------------
package * version date lib source
assertthat 0.2.1 2019-03-21 [1] CRAN (R 3.5.3)
backports 1.1.3 2018-12-14 [1] CRAN (R 3.5.2)
Biobase 2.42.0 2018-10-30 [1] Bioconductor
BiocGenerics 0.28.0 2018-10-30 [1] Bioconductor
callr 3.2.0 2019-03-15 [1] CRAN (R 3.5.3)
cli 1.1.0 2019-03-19 [1] CRAN (R 3.5.3)
codetools 0.2-16 2018-12-24 [2] CRAN (R 3.5.3)
crayon 1.3.4 2017-09-16 [1] CRAN (R 3.5.3)
curl 3.3 2019-01-10 [1] CRAN (R 3.5.3)
desc 1.2.0 2018-05-01 [1] CRAN (R 3.5.3)
devtools * 2.0.1 2018-10-26 [1] CRAN (R 3.5.3)
digest 0.6.18 2018-10-10 [1] CRAN (R 3.5.3)
fs 1.2.7 2019-03-19 [1] CRAN (R 3.5.3)
glue 1.3.1 2019-03-12 [1] CRAN (R 3.5.3)
magrittr 1.5 2014-11-22 [1] CRAN (R 3.5.3)
memoise 1.1.0 2017-04-21 [1] CRAN (R 3.5.3)
mzR * 2.16.2 2019-03-05 [1] Bioconductor
ncdf4 1.16.1 2019-03-11 [1] CRAN (R 3.5.3)
pkgbuild 1.0.3 2019-03-20 [1] CRAN (R 3.5.3)
pkgload 1.0.2 2018-10-29 [1] CRAN (R 3.5.3)
prettyunits 1.0.2 2015-07-13 [1] CRAN (R 3.5.3)
processx 3.3.0 2019-03-10 [1] CRAN (R 3.5.3)
ProtGenerics 1.14.0 2018-10-30 [1] Bioconductor
ps 1.3.0 2018-12-21 [1] CRAN (R 3.5.3)
R6 2.4.0 2019-02-14 [1] CRAN (R 3.5.3)
Rcpp * 1.0.1 2019-03-17 [1] CRAN (R 3.5.3)
remotes 2.0.2 2018-10-30 [1] CRAN (R 3.5.3)
rlang 0.3.3 2019-03-29 [1] CRAN (R 3.5.3)
rprojroot 1.3-2 2018-01-03 [1] CRAN (R 3.5.3)
rstudioapi 0.10 2019-03-19 [1] CRAN (R 3.5.3)
sessioninfo 1.1.1 2018-11-05 [1] CRAN (R 3.5.3)
usethis * 1.4.0 2018-08-14 [1] CRAN (R 3.5.3)
withr 2.1.2 2018-03-15 [1] CRAN (R 3.5.3)
yaml 2.2.0 2018-07-25 [1] CRAN (R 3.5.2)
[1] C:/Users/tuhu/Documents/R/win-library/3.5
[2] C:/Program Files/R/R-3.5.3/library
Hopefully this suggestion will work. The warning about different Rcpp versions if is pretty common when installing mzR, but I think it's being elevated to an error by the remotes package, as that's its default behaviour. More details on this and how to change the behaviour can be found at https://remotes.r-lib.org/#environment-variables