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Hi, I know the omics and clinical data of the TCGA project can be downloaded through TCGAbiolink, but where can I find the subtype information? I want to find the subtypes of TCGA melanoma (SKCM) patients, like BRAF, NRAS, NF1 mutation patients. Where can I find it? Thanks. Best regards
Hi, it may be too late already, but have a look at this page: https://www.bioconductor.org/packages/release/bioc/vignettes/TCGAbiolinks/inst/doc/subtypes.html
Here you find subtype classifications for many TCGA cancer types, including the original reference and an explanation of the interface for programmatic download.