Entering edit mode
Morning all! Just a quick question. I have a basic enrichment calculation of go terms as below:
ego2 <- enrichGO(gene = rownames(tmpGR),
OrgDb = org.Mm.eg.db,
keyType = 'ENSEMBL',
ont = "CC",
pAdjustMethod = "BH",
pvalueCutoff = 0.01,
qvalueCutoff = 0.05)
ego2 <- setReadable(ego2, OrgDb = org.Mm.eg.db)
enrichGOPlotMASSIVE <- heatplot(ego2, foldChange = geneList, showCategory = 100)
dotplotFINE <- dotplot(ego2, showCategory=30) + ggtitle("dotplot for GSEA")
barplotFINE <- barplot(ego2, showCategory=20)
networkMASSIVE <- cnetplot(ego2, foldChange=geneList)
However, besides the dot plot and bar plot, the heatplot and cnetplot are huge. Is there something basic I can do to reduce the input into these display functions? The showCateregory in the heatplot doesn't seem to reduce what I expect it to reduce.
Thanks