openPrimeR can't find external dependencies
0
0
Entering edit mode
@vinicius-henrique-da-silva-6713
Last seen 18 months ago
Brazil

I am trying to install the package openPrimeRui. This package requires some external dependencies (not R packages), which are checked once you open the Shiny app:

library(openPrimeRui)
if (interactive()) {
    startApp()
}

enter image description here

However, I have none of them. Then, I started by downloading the MELTING software (http://www.ebi.ac.uk/biomodels/tools/melting/). As far as I understand, in Windows I can't install it like a normal software pushing the .exe. Then, I placed the source code in my Program Files folder as a subfolder called MELTING. I assumed that it could work because in the openPrimeRui webpage (https://bioconductor.org/packages/release/bioc/vignettes/openPrimeR/inst/doc/openPrimeR_vignette.html) it says:

... tools installed on your system such that they are in your system’s path

It does not work. I am using Windows 10. Some enlightenment on how to make R find this expected external dependencies?

openPrimeRui openPrimeR • 783 views

Login before adding your answer.

Traffic: 467 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6