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aviv.de-morgan
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@avivde-morgan-20918
Last seen 5.4 years ago
The peak format required by DiffBind is BED, whereas MACS2 does not output BED files as MACS14 (the earlier release) did. Rather, it outputs BedGraph (bdg) files, or a variant format of a BED file (see here: https://github.com/taoliu/MACS under Output Files), i.e., the *.narrowPeak or *.broadPeak files. How can this be resolved?
Hi all, I was wondering how to read broadpeaks file obtained after running MACS2 with the argument --broad.
Thank you!
Best
Marianna