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jledmondson
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@jledmondson-21215
Last seen 5.5 years ago
I cannot get NOISeq to correctly write the data from my count matrix. I have followed the protocol and mirrored the formatting and procedure of the example data.
mydata <- NOISeq::readData(data = total_counts, length = mylength, gc = mygc, biotype = mybiotype, chromosome = mychrom, factors = factors)
str(mydata)
head(assayData(mydata)$exprs)
head(pData(mydata))
View(featureData(mydata)@data)
The last line returns a data.frame with all of the correct row names (gene ID's) and all the correct columns, but every entry is 'NA'. I cannot determine what could be the problem. I have ensured that the format and class of each object matches the example data. Please let me know if anyone has experience using NOISeq and what the problem might be. Thank you.