Question: exomeCopy compileCopyCountSegments error
0
gravatar for kkyung412
13 days ago by
kkyung4120
kkyung4120 wrote:

Hello.

I am getting an error message with the exomecopy, compileCopyCountSegments

compileCopyCountSegments(fit.list)

Error in FUN(X[[i]], ...) :

trying to get slot "path" from an object of a basic class ("NULL") with no slots

When I looked at the Fit.list, there was really NULL data How can I handle this?

Please help me.ㅜㅜ [[3]][[15]] NULL

[[3]][[16]] NULL

[[3]][[17]] NULL

[[3]][[18]] NULL

[[3]][[19]] NULL

[[3]][[20]] NULL

[[3]][[21]] NULL

[[3]][[22]] NULL

[[3]][[23]] NULL

[[3]][[24]] NULL

exomecopy • 39 views
ADD COMMENTlink modified 13 days ago by Michael Love24k • written 13 days ago by kkyung4120
Answer: exomeCopy compileCopyCountSegments error
0
gravatar for Michael Love
13 days ago by
Michael Love24k
United States
Michael Love24k wrote:

I haven't touched exomeCopy in years, maybe since 2011, so I don't remember the details. Perhaps there are no calls in fit.list? Can you plot one of the fits to see if there are any calls outside of copy number = 2?

ADD COMMENTlink written 13 days ago by Michael Love24k

hi Michael

I can't draw a plot now. The warning message for exomeCopy was as follows. Please help me.ㅜㅜ

1: In exomeCopy(counts[seqnames(counts) == seq.name], sample.name, : More than 90% of sample counts are zero, exomeCopy will return NULL 2: In exomeCopy(counts[seqnames(counts) == seq.name], sample.name, : More than 90% of sample counts are zero, exomeCopy will return NULL 3: In exomeCopy(counts[seqnames(counts) == seq.name], sample.name, : More than 90% of sample counts are zero, exomeCopy will return NULL 4: In exomeCopy(counts[seqnames(counts) == seq.name], sample.name, : More than 90% of sample counts are zero, exomeCopy will return NULL 5: In exomeCopy(counts[seqnames(counts) == seq.name], sample.name, : More than 90% of sample counts are zero, exomeCopy will return NULL 6: In exomeCopy(counts[seqnames(counts) == seq.name], sample.name, : More than 90% of sample counts are zero, exomeCopy will return NULL 7: In exomeCopy(counts[seqnames(counts) == seq.name], sample.name, : More than 90% of sample counts are zero, exomeCopy will return NULL 8: In exomeCopy(counts[seqnames(counts) == seq.name], sample.name, : More than 90% of sample counts are zero, exomeCopy will return NULL 9: In exomeCopy(counts[seqnames(counts) == seq.name], sample.name, : More than 90% of sample counts are zero, exomeCopy will return NULL

ADD REPLYlink written 12 days ago by kkyung4120

It looks like the reason it returns NULL is because there are many 0’s.

ADD REPLYlink written 12 days ago by Michael Love24k

It looks like the reason it returns NULL is because there are many 0’s.

ADD REPLYlink written 12 days ago by Michael Love24k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 333 users visited in the last hour