Dear all

I am using the following function in ASpli package:

mm10 <- TxDb.Mmusculus.UCSC.mm10.knownGene
features <- binGenome(mm10)

targetssmall <- cbind(c( "257101.bam","258113.bam","259125.bam","260137.bam"),c("la", "la", "pi", "pi"))

colnames(targetssmall)[1] <-"bam" 
colnames(targetssmall)[2] <-"factor1"

plotGenomicRegions( features=features, x='13179:E001',  xIsBin = TRUE,  genomeTxDb=mm10, targets=targetssmall, mainFontSize = 12, annotationHeight = 0.1, useTransparency = TRUE, outfileType = 'pdf')

Error in FUN(X[[i]], ...) : failed to build index file: Z://home/mernal

This code works well in Ubuntu 18.04.2 LTS but it fails with Windows10. The error appears when generating the files in the 'tmp' dir, windows is not able to do it.

Any help is welcome!

Hi! Thanks for your interest in ASpli.

I'm sorry for the bug. We were working hard in a new release of the package with some important changes. You can get it from the devel branch of bioconductor [https://www.bioconductor.org/packages/devel/bioc/html/ASpli.html].

Please, check the new functions for plots and reports. We did a great effor to improve them

Let me know if you need more help,

Estefi