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aliceathan
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@aliceathan-21477
Last seen 4.7 years ago
Using the NRLB software for SELEX data. I have an error in selex.loadAnnotation(exampleFiles[3]) command. I am not familiar with R. Error in .jcall("RJavaTools", "Ljava/lang/Object;", "invokeMethod", cl, : java.lang.NoClassDefFoundError: javax/xml/bind/JAXBContext Any help could be great!
Please install java 9 or older. Once installed, check that it is the version being used for linux (java -version). If it is not, change it manually:
sudo update-alternatives --display java
sudo update-alternatives --config java (then select the version of java to use)
It is then possible that R will not find rJava.so, if that is the case, please reconfigure: sudo R CMD javareconf
Close R, reopen, and try again. Hope it helps.