Question: Query relating pathway enrichment analysis for DEGs using KEGG or any other database.
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gravatar for omarrafiqued
7 weeks ago by
omarrafiqued50
omarrafiqued50 wrote:

KEGG is a database resource (http://www.genome.jp/kegg/) that contains all information of genomes, their relationships to biological systems and their interactions with the environment. We use KEGG pathway database to identify the main functional and metabolic pathways in deferentially expressed genes. This is known as Pathway enrichment analysis for DEG. We can do this in R programming using different packages but most of the packages need an internet connection to work. I wont be having access to internet for 3 months, so, is there any R package which can do the Pathway enrichment analysis for DEG with no access to internet. (I wont mind if it uses anything other than KEGG)

Grateful.

ADD COMMENTlink modified 7 weeks ago • written 7 weeks ago by omarrafiqued50
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