I am having trouble installing RforProteomics in RStudio and I was hoping someone could help. When loading RforProteomics from BiocManager install function, the package will not load. The package loaded fine on my personal computer but it will not load on a university networked computer.
Does anyone have a remedy?
> BiocManager::install("RforProteomics") Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.1 (2019-07-05) Installing package(s) 'RforProteomics' installing the source package ‘RforProteomics’ trying URL 'https://bioconductor.org/packages/3.10/data/experiment/src/contrib/RforProteomics_1.24.0.tar.gz' Content type 'application/x-gzip' length 9791944 bytes (9.3 MB) downloaded 9.3 MB * installing *source* package 'RforProteomics' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning message: In fun(libname, pkgname) : mzR has been built against a different Rcpp version (1.0.2) than is installed on your system (1.0.3). This might lead to errors when loading mzR. If you encounter such issues, please send a report, including the output of sessionInfo() to the Bioc support forum at https://support.bioconductor.org/. For details see also https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue. Error in findpack(package, lib.loc) : there is no package called 'RforProteomics' Calls: <Anonymous> -> findpack Execution halted ERROR: lazy loading failed for package 'RforProteomics' * removing '\\myfiles/JB3082/dos/R/win-library/3.6/RforProteomics' The downloaded source packages are in ‘C:\Users\JB3082\AppData\Local\Temp\RtmpeqwBV5\downloaded_packages’ Old packages: 'protViz', 'scales' Update all/some/none? [a/s/n]: a There are binary versions available but the source versions are later: binary source needs_compilation protViz 0.4.0 0.5.1 TRUE scales 1.0.0 1.1.0 TRUE Binaries will be installed trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.6/protViz_0.4.0.zip' Content type 'application/zip' length 3433236 bytes (3.3 MB) downloaded 3.3 MB trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.6/scales_1.0.0.zip' Content type 'application/zip' length 1073764 bytes (1.0 MB) downloaded 1.0 MB package ‘protViz’ successfully unpacked and MD5 sums checked package ‘scales’ successfully unpacked and MD5 sums checked The downloaded binary packages are in C:\Users\JB3082\AppData\Local\Temp\RtmpeqwBV5\downloaded_packages Warning message: In install.packages(...) : installation of package ‘RforProteomics’ had non-zero exit status > sessionInfo() R version 3.6.1 (2019-07-05) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 17763) Matrix products: default locale:  LC_COLLATE=English_United Kingdom.1252 LC_CTYPE=English_United Kingdom.1252 LC_MONETARY=English_United Kingdom.1252  LC_NUMERIC=C LC_TIME=English_United Kingdom.1252 attached base packages:  stats graphics grDevices utils datasets methods base other attached packages:  BiocManager_1.30.10 loaded via a namespace (and not attached):  compiler_3.6.1 parallel_3.6.1 tools_3.6.1 BiocParallel_1.20.0