Microarray expression analysis
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@manuchandwadkar-22916
Last seen 4.7 years ago

I am unable to install "hgu133plus2cdf" in R.

>   BiocManager::install("hgu133plus2cdf")
Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.2 (2019-12-12)
Installing package(s) 'hgu133plus2cdf'
installing the source package ‘hgu133plus2cdf’

trying URL 'https://bioconductor.org/packages/3.10/data/annotation/src/contrib/hgu133plus2cdf_2.18.0.tar.gz'
Content type 'application/x-gzip' length 4353300 bytes (4.2 MB)
downloaded 4.2 MB

* installing *source* package 'hgu133plus2cdf' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'AnnotationDbi::head' by 'utils::head' when loading 'hgu133plus2cdf'
Warning: replacing previous import 'AnnotationDbi::tail' by 'utils::tail' when loading 'hgu133plus2cdf'
** help
*** installing help indices
  converting help for package 'hgu133plus2cdf'
    finding HTML links ... done
    geometry                                html  
    hgu133plus2cdf                          html  
    hgu133plus2dim                          html  
** building package indices
** testing if installed package can be loaded from temporary location
*** arch - i386
Warning: replacing previous import 'AnnotationDbi::head' by 'utils::head' when loading 'hgu133plus2cdf'
Warning: replacing previous import 'AnnotationDbi::tail' by 'utils::tail' when loading 'hgu133plus2cdf'
*** arch - x64
** testing if installed package can be loaded from final location
*** arch - i386
Warning: replacing previous import 'AnnotationDbi::head' by 'utils::head' when loading 'hgu133plus2cdf'
Warning: replacing previous import 'AnnotationDbi::tail' by 'utils::tail' when loading 'hgu133plus2cdf'
*** arch - x64
annotation • 1.2k views
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Entering edit mode

Dear manuchandwadkar,

Welcome to the Bioconductor forum, but you've posted exactly the same question three times now:

Please don't post the same question more than once and please don't post different questions with exactly the same title:

Please consult the posting guide

and also see this post for how to format R code and output in a question:

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Entering edit mode
Guido Hooiveld ★ 4.1k
@guido-hooiveld-2020
Last seen 16 hours ago
Wageningen University, Wageningen, the …

There are no errors, only warnings... Does library(hgu133plus2cdf) work? If yes, then the package installed correctly.

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