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sonyuna90
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@sonyuna90-21186
Last seen 5.4 years ago
Hi, I have errors after running ChIPQC.
ChIPQCreport(chipObj, reportName="ChIP QC report: H3.3", reportFolder="ChIPQCreport") Saving 7 x 7 in image Saving 7 x 7 in image Saving 7 x 7 in image Using Sample as id variables Saving 7 x 7 in image Saving 7 x 7 in image Error in names(res) <- c("Reads", "Map%", "Filt%", "Dup%", "ReadL", "FragL", : 'names' attribute [9] must be the same length as the vector [7] In addition: Warning message: Removed 300 rows containing missing values (geom_path).
I can't get the QC summary and I am not sure if I can trust even the image files after generating from this command line. Any idea and I saw the posting with similar issues, but I couldn't find any answer.
Thank you in advance.
I have the same error and just reverted my R to R-3.5.1 to solve the problem. I think the issue is with 3.6.1 that QCmetrics is getting different number of items to that of the ChIPQCreport() function.
and I think that's what shengqh did for the bug fix.
@Rory Stark, we are setting up an automated pipeline with a ChIPQCreport running inside at HSPH Bioinformatics Core. Will there be a bug fix done soon for this? Thanks.
I am experiencing the same error and also cannot find a solution online... any insights to resolving this would be much appreciated
I fixed the problem in my forked one tonight, you may install it and have a try. I will contact author to fix the bug later.
https://github.com/shengqh/ChIPQC
Hello, I still get the error. I don't know what to do.