Differential Expression by Chromosome using edgeR
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@missmoparker-23241
Last seen 4.7 years ago

Hi All,

I have a .csv file of my samples, gene IDs, and counts, and have already run a simple DE analysis. I would like to also pull out the differentially expressed genes and on which chromosome they are located on. How can I go about doing this? Thank you!

edgeR chromosome RNAseq • 618 views
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swbarnes2 ★ 1.4k
@swbarnes2-14086
Last seen 1 day ago
San Diego

EdgeR doesn't know where genes are. But ensembl does. So get your list of gene IDs and use biomaRt to query ensembl.

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