Bioconductor Chromosome

Showing : chromosome • reset

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527

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gene chromosome proteincodinggene

12 months ago Liliian • 0

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1.8k

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GenomicRanges split chromosome TxDb

updated 2.3 years ago by Hervé Pagès 16k • written 2.3 years ago by jon.klonowski ▴ 40

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9.6k

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SNP rs id Biomart Chromosome coordinates

updated 9 months ago by James W. MacDonald 65k • written 3.7 years ago by Mahan • 0

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766

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Chromosome Annotation

updated 3.7 years ago by James W. MacDonald 65k • written 3.7 years ago by Bine ▴ 40

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766

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tximport GCF feature table parsing error chromosome

updated 4.0 years ago by Michael Love 41k • written 4.0 years ago by knholm • 0

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499

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RefSeq Chromosome Mutalyzer

4.0 years ago heiko_kin ▴ 60

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484

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edgeR chromosome RNAseq

updated 4.0 years ago by swbarnes2 ★ 1.3k • written 4.0 years ago by missmoparker • 0

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780

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homo sapiens chromosome

updated 5.9 years ago by James W. MacDonald 65k • written 5.9 years ago by xchen8 • 0

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1.8k

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bsgenome chromosome reference genome

updated 6.1 years ago by Hervé Pagès 16k • written 6.1 years ago by Nathan Sheffield ▴ 10

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2.5k

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Gviz chromosome ideogram

updated 7.1 years ago by bernatgel ▴ 150 • written 7.1 years ago by dulunar ▴ 10

10 results • Page 1 of 1

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Comment: flowStats Search Error by tholmes • 0

Thank you so much!

Comment: what is the sampleFiles by James W. MacDonald 65k

I don't see any sampleFiles argument for any function in that package. Ideally you would at least tell us what function you are using.

Comment: Interaction Terms in DESeq2 - Shrinkage by Michael Love 41k

Yes, apeglm requires relevel and nbinomWaldTest to generate the coefficient estimate and its SE. Alternatively you can use ashr with a con…

Comment: A ComBat-seq issue: the covariates are confounded by schlumbohm • 0

Dear ATpoint, thank you for the comment. I did correct the question. For the group, I did accidentally share the input for all three batch…

Comment: Memory errors using read.bismark? by Peter Hickey ▴ 700

If you process serially (i.e. with `BPPARAM = SerialParam()`) then you might be okay. The final object will be on the order of 250 GB in-me…

Votes

Comment: Memory errors using read.bismark?

Comment: Not fully paired differential gene expression analysis

Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

Comment: Not fully paired differential gene expression analysis

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