Question

.csv files from miRDeep2 to upload in R studio for DESeq2

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ljbond • 0

@ljbond-23184

Last seen 4.6 years ago

I have 15 samples completed using miRDeep2 but need to upload files to R studio to get started on DESeq2. How do I input the files so I can start pre-filtering before the differential expression analysis?

deseq2 • 744 views

ADD COMMENT • link updated 4.7 years ago by Michael Love 43k • written 4.7 years ago by ljbond • 0

score 0 · Answer 1 · 2020-03-26

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Michael Love 43k

@mikelove

Last seen 4 days ago

United States

Take a look at the workflow, we have lots of details about various input data types.

ADD COMMENT • link 4.7 years ago Michael Love 43k

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Where do I find these workflows? I am new to this website.

ADD REPLY • link 4.7 years ago ljbond • 0

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Where do I find these workflows? I am new to this website.

ADD REPLY • link 4.7 years ago ljbond • 0

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The workflow is linked on the first page of the vignette, the workflow package is rnaseqGene.

ADD REPLY • link 4.7 years ago Michael Love 43k