vignette feedback - HowTo: Automated Querying of PubMed Data
0
0
Entering edit mode
John Zhang ★ 2.9k
@john-zhang-6
Last seen 9.6 years ago
>Dear Sir: > >Thank you for this R tool. As I sometimes have a developer role, I >though I would give you some feedback. > > I recently installed BioConductor using >source("http://www.bioconductor.org/getBioC.R") and getBioC(libName = >"all"). Although I was suscessful in completing the vignette, "HowTo: > Automated Querying of PubMed Data", I spent quite a bit of time on the >step "library(hgu95a)" hgu95a data package is not available any more. We are going to replace hgu95a with hgu95av2 in the vignettes and elsewhere. > >First I got the no package error, so I tried hgu95av2 with the same >result. Next I tried getBioC(libName = "hgu95av2") and got the error >that the library is not valid. Finally I download the tar.gz file to my >disk and installed it using the R command. getBioC is not for getting data packages. Data packages have to be obtained manually. > >I guess that hgu95a is no longer available, and probably its absence >affects only tens of genes. Thank you for reporting the error. > >Sincerely, >Lynn > >-- >Lynn Young * National Institutes of Health, USA >CIT, MSC 5620; Bethesda, Maryland 20892-5620 >Phone: (301) 496-1137 * FAX: (301) 402-4544 >E-mail: lynny@helix.nih.gov > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor Jianhua Zhang Department of Biostatistics Dana-Farber Cancer Institute 44 Binney Street Boston, MA 02115-6084
Cancer hgu95a hgu95av2 Cancer hgu95a hgu95av2 • 734 views
ADD COMMENT

Login before adding your answer.

Traffic: 665 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6