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@aleksandarbaburskig-23324
Last seen 3.8 years ago
Hi, I have problem creating DEXSeq HTML Report (DEXSeq 1.34.0). Before this step everything works fine. But when I run:
DEXSeqHTML(object = dxr1,
FDR=0.05,
fitExpToVar = "condition",
path = "./",
file = "report.html",
BPPARAM = MulticoreParam(workers = 8))
analysis fails with following error:
Error: BiocParallel errors
element index: 44, 45, 46, 47, 48, 49, ...
first error: 'relevel' only for (unordered) factors
In addition: Warning message:
stop worker failed:
attempt to select less than one element in OneIndex
Execution haltedanalysis
or when I remove parallelisation, I get this error message:
Error in relevel.default(mf$exon, "others") :
'relevel' only for (unordered) factors
Calls: DEXSeqHTML ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Sometimes it works for low number of files, but with more than 8 analysis always fails. Can someone help please :)
Aleksandar
Thanks for reporting this. It is a bug resulting from the change on the R base defaults in
stringsAsFactors=
. I will fix this as soon as I find some time and let you know.Thanks a lot :) Aleksandar