User: Kevin Blighe

gravatar for Kevin Blighe
Kevin Blighe30
Reputation:
30
Status:
New User
Location:
Republic of Ireland
Website:
https://github.com/kev...
Twitter:
KevinBlighe
Scholar ID:
Google Scholar Page
Last seen:
4 minutes ago
Joined:
6 months, 2 weeks ago
Email:
k****@clinicalbioinformatics.co.uk

*also Moderator on Biostars: biostar41557

----------------------------------------------

Developer / Maintainer of Bioconductor packages:

Posts by Kevin Blighe

<prev • 18 results • page 1 of 2 • next >
0
votes
1
answer
622
views
1
answers
Comment: C: tri.counts.method parameter in deconstructSigs
... I would contact the maintainer / developer directly. She is not registered in these forums, as far as I'm aware. Also, this package is on CRAN, not Bioconductor. ...
written 11 days ago by Kevin Blighe30
0
votes
1
answer
622
views
1
answers
Comment: C: tri.counts.method parameter in deconstructSigs
... I would contact the maintainer / developer directly. She is not registered in these forums, as far as I'm aware. Also, this package is on CRAN, not Bioconductor. ...
written 11 days ago by Kevin Blighe30
0
votes
1
answer
118
views
1
answers
Comment: C: MDS Plot help in edgeR
... Thank you Gordon - no problem. We try our best to be as accurate as possible. If in doubt, we direct users here. Usually most questions are already answered here on Bioconductor by you, Aaron, or James, in fact. ...
written 14 days ago by Kevin Blighe30
0
votes
1
answer
118
views
1
answers
Comment: C: MDS Plot help in edgeR
... I do not know if this is the same user on Biostars, but I and others have just been providing comments here: https://www.biostars.org/p/356810/#357188 I have added a final comment in response to your answer here, Gordon ...
written 15 days ago by Kevin Blighe30
0
votes
1
answer
70
views
1
answers
Comment: C: Uncertain about PCA plot for DESeq2 analysis
... As Michael implied, the differences that you expect may simply not exist in this dataset. Also, you should not make any major conclusion about your data from just the PCA bi-plot. In most cases, major differences between control / healthy and other samples will simply not be revealed by PCA. What yo ...
written 15 days ago by Kevin Blighe30
0
votes
1
answer
73
views
1
answers
Comment: C: Is lmFit() the fastest way to fit thousands of linear model in R and use what a
... I recently had RegParallel accepted to Bioconductor, which can fit independent models via lm(), glm(), bayesglm(), coxph(), et cetera, and parallelise this process (also 'nested' parallel processing is possible). It is not as quick as lmFit, though. I developed it while having to run conditional log ...
written 19 days ago by Kevin Blighe30
0
votes
1
answer
102
views
1
answers
Answer: C: DESeq2: interaction term
... Hey Michael, I had been assisting the user on Biostars: https://www.biostars.org/p/353618/#356111 On more than 1 occasion, I had advised to read the DESeq2 vignette. salamandra, if you do post on both Biostars and Bioconductor, can you try to indicate this when you re-post? Many users are on both ...
written 22 days ago by Kevin Blighe30
0
votes
1
answer
69
views
1
answers
Comment: C: GDCprepare stop working for some unknown reason
... Cross-posted: https://www.biostars.org/p/353742/ ...
written 6 weeks ago by Kevin Blighe30
2
votes
2
answers
5.8k
views
2
answers
Comment: C: WGCNA: What is `soft thresholding`?
... Here, I would choose a value of 7 ...
written 6 weeks ago by Kevin Blighe30
0
votes
1
answer
84
views
1
answers
Answer: A: Timeout was reached error in GEOquery package
... Cross-posted: https://www.biostars.org/p/329485/ Note that the first argument should be: GEO, A character string representing a GEO object for download and parsing. (eg., 'GDS505','GSE2','GSM2','GPL96') Where you have `dataset`, you should have a character ID representing the ID of the GEO study ...
written 8 weeks ago by Kevin Blighe30

Latest awards to Kevin Blighe

Autobiographer 6 months ago, has more than 80 characters in the information field of the user's profile.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 327 users visited in the last hour