User: Kevin Blighe

gravatar for Kevin Blighe
Kevin Blighe10
Reputation:
10
Status:
New User
Location:
Republic of Ireland
Website:
https://github.com/kev...
Twitter:
KevinBlighe
Last seen:
2 hours ago
Joined:
4 months, 1 week ago
Email:
k****@clinicalbioinformatics.co.uk

*also on Biostars: biostar41557

Incrocio le dita e spero.

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Developer / Maintainer of Bioconductor packages:

Posts by Kevin Blighe

<prev • 8 results • page 1 of 1 • next >
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Comment: C: Using GenomicDataCommons R package to identify cases with both DNA methylation a
... Sean thanks so much for answering. I directed the user here from Biostars: https://www.biostars.org/p/344349/#344978 ...
written 25 days ago by Kevin Blighe10
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Comment: C: WGCNA Co-expression network analysis on cuffdiff output
... Cross-posted on Biostars: https://www.biostars.org/p/338241/ ...
written 26 days ago by Kevin Blighe10
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Comment: C: GDC server down, try to use this package later
... You may try to install the development version from GitHub: devtools::install_github("BioinformaticsFMRP/TCGAbiolinks") ...
written 26 days ago by Kevin Blighe10
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Comment: C: Coverage profile comparison
... I think that the localised regression idea will stand better in a publication or report. You could fit the model and then check the coefficient to show that there are no differences between the 2 samples. A correlation with a highly statistically significant p-value could assist, too. I am not sure ...
written 28 days ago by Kevin Blighe10
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Comment: C: Coverage profile comparison
... Not an answer but a suggestion: it sounds like you could fit a localised regression to the data and then compare coverage profiles that way. By doing this, you could also introduce covariates into the model. I have never done this previously; so, remains a suggestion. ...
written 4 weeks ago by Kevin Blighe10
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Comment: C: Limma Volcano Plot Highlight Top Genes by Color
... You can also try out EnhancedVolcano (Bioconductor): https://github.com/kevinblighe/EnhancedVolcano To shade any gene or group of genes by any colour that you want, take a look at the end of the vignette. You can also label any specific gene or genes. Kevin ...
written 5 weeks ago by Kevin Blighe10
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Comment: C: extracting the genes associated with the groups or samples in pheatmap.
... Thank you for linking to my answer on Biostars, Malcolm! ...
written 6 weeks ago by Kevin Blighe10
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Comment: C: Why my limma DEG result in top Table all without significant meaning,showing log
... Cross-posted on Biostars: https://www.biostars.org/p/336903/ ...
written 9 weeks ago by Kevin Blighe10

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