Question

DEXSEQ error (subscript out of boundsflattenedFile)

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huck.thornton ▴ 10

@huckthornton-23681

Last seen 4.4 years ago

Hi all,

I am attempting to run DEXSEQ.

When I run the command, "dxd = DEXSeqDataSetFromHTSeq(countFiles, sampleData=sampleTable, design=~sample + exon + condition:exon, flattenedfile=flattenedFile)", I have been receiving the error "Error in lf[[1]]: subscript out of .boundslattenedFile".

I wanted to ask how to correct this issue.

I have been using the following code:

Thanks.

software error • 660 views

ADD COMMENT • link 4.5 years ago huck.thornton ▴ 10

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Would be helpful to follow up on your other question ( https://support.bioconductor.org/p/131725/ ). All of these problems may invariably be connected to the same underlying / inherent issue.

ADD REPLY • link 4.5 years ago Kevin Blighe ★ 4.0k

score 0 · Answer 1 · 2020-06-15

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huck.thornton ▴ 10

@huckthornton-23681

Last seen 4.4 years ago

I was using the wrong flattenedFile. I corrected it and it seems to be working now.

ADD COMMENT • link 4.5 years ago huck.thornton ▴ 10