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A user who I am helping to learn R and BioC has the following problem.
He
is trying to use justRMA to normalize a set of affy CEL files. He is
on
MacOS and is running R-2.2.1 (I know, upgrade, but....). Here is what
he
describes:
> sessionInfo()
R version 2.2.1, 2005-12-20, powerpc-apple-darwin7.9.0
attached base packages:
[1] "tools" "methods" "stats" "graphics" "grDevices"
"utils" "datasets" "base"
other attached packages:
affy Biobase
"1.8.1" "1.8.0"
> library(affy)
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material.
To view, simply type 'openVignette()' or start with
'help(Biobase)'.
For details on reading vignettes, see the openVignette help page.
> est <- justRMA()
trying URL
'http://bioconductor.org/packages/data/annotation/1.7/bin/macosx/power
pc/con
trib/2.2/hgu133plus2cdf_1.10.0.tgz'
Content type 'application/x-gzip' length 4391892 bytes
opened URL
==================================================
downloaded 4288Kb
Error in sprintf(gettext(fmt, domain = domain), ...) :
argument is missing, with no default
tar: ~/Library/R/library/file56e509fe: Cannot chdir: No such file or
directory
tar: Error is not recoverable: exiting now
>
Any hints?
Thanks,
Sean