Identify significantly different DNA methylation probes in tumor and normal samples GBM ELMER R package
0
0
Entering edit mode
@andrade4beatriz-24126
Last seen 12 months ago

Dear all,

I am a master student, I am new to the field and I have many difficulties. I am currently trying to identify the most methylated sites of tumor samples and normal TCGA-GBM tissue. However, when I use the get.diff.meth function from the ELMER package, I get 0 relevant probes and this is due to the fact that I only have 1 sample of normal solid tissue. I was told to add GBM normal samples from GEO. However, I already downloaded the data, but my question is: How do I gather the DNA methylation data from GEO and TCGA into a single variable to use the get.diff.meth function.

Thank you very much.

ELMER TCGA GEO • 166 views
ADD COMMENT

Login before adding your answer.

Traffic: 161 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6