Error when launching Shiny app in package sangeranalyseR
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dh.heredero ▴ 10
@dhheredero-24261
Last seen 15 months ago

Whenever I try yo launch the Shiny app in R, after having succesfully generated a SangerAlignment file, with the code

launchApp(sangerAlignment)

an error message appears:

"An error has occurred! Couldn't normalize path in 'addResourcePath', with arguments: 'prefix' = 'AdminLTE-2.0.6'; 'directoryPath' = 'C:/Users/biocbuild/bbs-3.12-bioc/R/library/shinydashboard/AdminLTE'

What does it mean? There is no such directory in the computer. The package is installed in another directory. Could this be related? I'm new to Shiny. How could I launch the app?

sangeranalyseR sanger • 604 views
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Hi @dh.heredero,

I am the maintainer of sangeranalyseR. I realized that you posted on stackoverflow too, and we can work on your problem here. shinydashboard package is used to create dashboards of Shiny applications embedded in sangeranalyseR. It seems like a version conflict issue to me now. Could you please provide your R session information sessionInfo() and a simple reproducible example here so that I can do some testing? Thanks a lot!

Howard

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I have opened an issue about this on GitHub as well: https://github.com/roblanf/sangeranalyseR/issues/60.

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I have the same issue. here's my Rsession:

R version 4.0.3 (2020-10-10) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 18362)

Matrix products: default

locale: [1] LCCOLLATE=EnglishUnited States.1252 [2] LCCTYPE=EnglishUnited States.1252
[3] LCMONETARY=EnglishUnited States.1252 [4] LCNUMERIC=C
[5] LC
TIME=English_United States.1252

attached base packages: [1] tools stats4 parallel stats graphics grDevices [7] utils datasets methods base

other attached packages: [1] sangeranalyseR0.99.28 logger0.1
[3] BiocStyle2.17.1 seqinr4.2-4
[5] kableExtra1.2.1 rmarkdown2.4
[7] openxlsx4.2.2 shinyWidgets0.5.4
[9] ggdendro0.1.22 shinycssloaders1.0.0 [11] excelR0.4.0 zeallot0.1.0
[13] DT0.16 plotly4.9.2.1
[15] ggplot23.3.2 data.table1.13.0
[17] shinyjs2.0.0 shinydashboard0.7.1
[19] shiny1.5.0 gridExtra2.3
[21] phangorn2.5.5 reshape21.4.4
[23] DECIPHER2.17.1 RSQLite2.2.1
[25] ape5.4-1 stringr1.4.0
[27] sangerseqR1.25.0 Biostrings2.57.2
[29] XVector0.29.3 IRanges2.23.10
[31] S4Vectors0.27.14 BiocGenerics0.35.4

loaded via a namespace (and not attached): [1] nlme3.1-149 bit644.0.5 webshot0.5.2
[4] httr
1.4.2 R62.4.1 DBI1.1.0
[7] lazyeval0.2.2 colorspace1.4-1 ade41.7-15
[10] withr
2.3.0 tidyselect1.1.0 bit4.0.4
[13] compiler4.0.3 rvest0.3.6 xml21.3.2
[16] scales
1.1.1 quadprog1.5-8 digest0.6.25
[19] pkgconfig2.0.3 htmltools0.5.0 fastmap1.0.1
[22] htmlwidgets
1.5.2 rlang0.4.8 rstudioapi0.11
[25] generics0.0.2 jsonlite1.7.1 dplyr1.0.2
[28] zip
2.1.1 magrittr1.5 Matrix1.2-18
[31] Rcpp1.0.5 munsell0.5.0 lifecycle0.2.0
[34] yaml
2.2.1 stringi1.5.3 MASS7.3-53
[37] zlibbioc1.35.0 plyr1.8.6 grid4.0.3
[40] blob
1.2.1 promises1.1.1 crayon1.3.4
[43] lattice0.20-41 knitr1.30 pillar1.4.6
[46] igraph
1.2.6 fastmatch1.1-0 glue1.4.2
[49] evaluate0.14 BiocManager1.30.10 vctrs0.3.4
[52] httpuv
1.5.4 gtable0.3.0 purrr0.3.4
[55] tidyr1.1.2 xfun0.18 mime0.9
[58] xtable
1.8-4 later1.1.0.1 viridisLite0.3.0
[61] tibble3.0.4 memoise1.1.0 ellipsis_0.3.1

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Hi everyone, Are there any variants to solve this mistake?

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