Hi, I want to apply GSVA on my RNAseq data, data are normalized with deseq2 (median of ratios normalization) and low count filtered. The geneset is downloaded from Msigdb (All genesets). I get the following error and I don't know what is the problem.
gsva_path <- gsva(Xdata,genesets,method= "gsva",min.sz=10, max.sz=500, verbose=TRUE) Estimating GSVA scores for 23978 gene sets. Computing observed enrichment scores Estimating ECDFs with Gaussian kernels Using parallel with 40 cores |======================================================================| 100% Error in dimnames(x) <- dn : length of 'dimnames'  not equal to array extent
I appreciate any suggestions for solving the problem.