Entering edit mode
zhangzhuo77
•
0
@zhangzhuo77-24384
Last seen 4.1 years ago
I installed R 4.0.3 and Rstudio. Then I installed BiocManager by the following command.
Operation:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install(version="3.11")
The response:
Bioconductor version 3.11 (BiocManager 1.30.10), R 4.0.3 (2020-10-10)
So it seems ok.
But I CAN'T succeed to install GEOquery.
Operation:
BiocManager::install("GEOquery" )
Responses:
URL’https://mirrors.ustc.edu.cn/CRAN/bin/windows/contrib/4.0/curl_4.3.zip'
Content type 'application/zip' length 4126745 bytes (3.9 MB)
downloaded 3.9 MB
......
URL’https://bioconductor.org/packages/3.11/bioc/bin/windows/contrib/4.0/GEOquery_2.56.0.zip'
Content type 'application/zip' length 13932568 bytes (13.3 MB)
downloaded 164 KB
Error in read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package", "Type")) :
Cann't open the link.
Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 536576 != reported length 746705
2: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 442368 != reported length 2418713
3: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 49152 != reported length 3167021
4: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 167936 != reported length 13932568
5: In unzip(zipname, exdir = dest) : Error in extracting 1 from zip file.
6: In read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package", "Type")) :
Can't open the compressed file 'BiocGenerics/DESCRIPTION',Possible due to 'No such file or directory'
It seems something wrong is with BiocGeneric.
Could anyone help me? Thank you in advance. I spent a few hours on it but just cann't solve it.
Thank you sincerely, Laurent.