Dear List, when using the simpleaffy package on Linux I don't have the qc function available (while the Windows version works well). Any suggestions how to solve this ? Thank you very much, Wolfgang Raffelsberger > sessionInfo() Version 2.3.1 (2006-06-01) x86_64-unknown-linux-gnu attached base packages: [1] "splines" "tools" "methods" "stats" "graphics" "grDevices" [7] "utils" "datasets" "base" other attached packages: hgu95av2cdf affyQCReport simpleaffy genefilter survival reposTools "1.12.0" "1.10.0" "2.6.0" "1.10.1" "2.26" "1.8.0" affydata affy affyio Biobase "1.8.0" "1.10.0" "1.0.0" "1.10.0" > R.version _ platform x86_64-unknown-linux-gnu arch x86_64 os linux-gnu system x86_64, linux-gnu status major 2 minor 3.1 year 2006 month 06 day 01 svn rev 38247 language R version.string Version 2.3.1 (2006-06-01) > > help(qc) No documentation for 'qc' in specified packages and libraries: you could try 'help.search("qc")' > > qc Error: object "qc" not found . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Wolfgang Raffelsberger, PhD Laboratoire de BioInformatique et G?nomique Int?grative IGBMC 1 rue Laurent Fries, 67404 Illkirch Strasbourg, France Tel (+33) 388 65 3301 Fax (+33) 388 65 3276 wolfgang.raffelsberger at igbmc.u-strasbg.fr

Hi Wolfgang, Wolfgang Raffelsberger wrote: > Dear List, > > when using the simpleaffy package on Linux I don't have the qc function > available (while the Windows version works well). > > Any suggestions how to solve this ? You probably need to re-install. > library(simpleaffy) Loading required package: affy Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, simply type 'openVignette()' or start with 'help(Biobase)'. For details on reading vignettes, see the openVignette help page. Loading required package: affyio Loading required package: genefilter Loading required package: survival Loading required package: splines Attaching package: 'simpleaffy' The following object(s) are masked _by_ .GlobalEnv : getBioC > qc standardGeneric for "qc" defined from package "simpleaffy" function (unnormalised, ...) standardGeneric("qc") <environment: 0xbf2ba8=""> Methods may be defined for arguments: unnormalised > sessionInfo() Version 2.3.0 beta (2006-04-10 r37717) x86_64-unknown-linux-gnu attached base packages: [1] "splines" "tools" "methods" "stats" "graphics" "grDevices" [7] "utils" "datasets" "base" other attached packages: simpleaffy genefilter survival affy affyio Biobase "2.6.0" "1.9.6" "2.23" "1.9.15" "0.99.1" "1.9.15" HTH, Jim > > Thank you very much, > Wolfgang Raffelsberger > > > > sessionInfo() > Version 2.3.1 (2006-06-01) > x86_64-unknown-linux-gnu > > attached base packages: > [1] "splines" "tools" "methods" "stats" "graphics" "grDevices" > [7] "utils" "datasets" "base" > > other attached packages: > hgu95av2cdf affyQCReport simpleaffy genefilter survival > reposTools > "1.12.0" "1.10.0" "2.6.0" "1.10.1" "2.26" > "1.8.0" > affydata affy affyio Biobase > "1.8.0" "1.10.0" "1.0.0" "1.10.0" > > R.version > _ > platform x86_64-unknown-linux-gnu > arch x86_64 > os linux-gnu > system x86_64, linux-gnu > status > major 2 > minor 3.1 > year 2006 > month 06 > day 01 > svn rev 38247 > language R > version.string Version 2.3.1 (2006-06-01) > > > > help(qc) > No documentation for 'qc' in specified packages and libraries: > you could try 'help.search("qc")' > > > > qc > Error: object "qc" not found > > > > . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . > . . . . . > > Wolfgang Raffelsberger, PhD > Laboratoire de BioInformatique et G?nomique Int?grative > IGBMC > 1 rue Laurent Fries, 67404 Illkirch Strasbourg, France > Tel (+33) 388 65 3301 Fax (+33) 388 65 3276 > wolfgang.raffelsberger at igbmc.u-strasbg.fr > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.