Dear Bioconductor mailing group, I would like to ask if anyone knows of a solid toxicogenomics database under MySQL - i.e. one with expression profiles for a number of toxicities. If it helps, the toxicities I am interested in are hepatotoxicities. I am a little shaky on just who gets to use MySQL and who does not, especially for Bioinformatians, so perhaps if someone could run over this for me, that would be greatly appreciated as well. Sincerely, Norman Goodacre

"N. Goodacre" <ng296 at="" cam.ac.uk=""> writes: > Dear Bioconductor mailing group, > > I would like to ask if anyone knows of a solid toxicogenomics database > under MySQL - i.e. one with expression profiles for a number of > toxicities. I'm not aware of such a database. > I am a little shaky on just who gets to use MySQL and who does not, > especially for Bioinformatians, so perhaps if someone could run over > this for me, that would be greatly appreciated as well. I'm not sure what you mean. Anyone who knows how gets to use MySQL. MySQL is released under the GPL. Is that your question? + seth

Hello, I don't know about any mysql db for toxicogenomics but I guess you're interested in the data rather than the underlying database software. There's the ILSI project on collecting toxicogenomics data together with classical toxicology measures. Check www.ilsi.org and search for toxicogenomics (actually it does not return much ...). We've participated in this cross-institutional/company project and submitted our data to ArrayExpress at the EBI, others have submitted theirs to GEO at the NCBI. You could look for 'ILSI' related projects in there. ArrayExpress returns 14 experiments. Sounds like a big project to gather all this data in areasonable way ... I know that GeneLogic offers a commercial database with in-house generated expression data + toxicities for several reference compounds in several tissues. hope this helps, +regards, Arne -----Original Message----- From: bioconductor-bounces@stat.math.ethz.ch [mailto:bioconductor-bounces at stat.math.ethz.ch]On Behalf Of N. Goodacre Sent: Friday, July 21, 2006 04:36 To: bioconductor at stat.math.ethz.ch Subject: [BioC] MySQL databases offering gene expression,esp. toxicogenomics data Dear Bioconductor mailing group, I would like to ask if anyone knows of a solid toxicogenomics database under MySQL - i.e. one with expression profiles for a number of toxicities. If it helps, the toxicities I am interested in are hepatotoxicities. I am a little shaky on just who gets to use MySQL and who does not, especially for Bioinformatians, so perhaps if someone could run over this for me, that would be greatly appreciated as well. Sincerely, Norman Goodacre _______________________________________________ Bioconductor mailing list Bioconductor at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor