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Hi Jakob, You'll have to alter the code yourself. I know that QCReport() from the affyQCReport package outputs a multi-page pdf file, so I would use that as a guide. This is my method for writing R code - find another function that does what I want, and then borrow the example :) Good luck, Jenny At 09:30 AM 10/10/2006, Jakob Hedegaard wrote: >Content-Disposition: inline >Content-Type: text/plain >Content-length: 1044 > >Hi > >I am very happy using the Limma-functions "plotMA3by2" and "imageplot3by2" >but would like the output as a single .pdf file instead of multiple .png files. > >Any suggestions on how to obtain this would be appreciated :-) > > >Best regards > >Jakob Hedegaard >Project scientist > > > > Danish Institute of Agricultural Sciences >Research Centre Foulum >Dept. of Genetics and Biotechnology >Blichers All? 20, P.O. BOX 50 >DK-8830 Tjele > >Phone: +45 8999 1900 >Direct: +45 8999 1363 >E-mail: Jakob.Hedegaard at agrsci.dk <mailto:jakob.hedegaard at="" agrsci.dk=""> >Web: www.agrsci.org <http: www.agrsci.org=""/> >________________________________ > >News and news media <http: www.agrsci.org="" navigation="" nyheder_og_presse=""> . > >This email may contain information that is confidential. Any use or >publication of this email without written permission from DIAS is not >allowed. If you are not the intended recipient, please notify DIAS >immediately and delete this email. > > > [[alternative HTML version deleted]] > > >_______________________________________________ >Bioconductor mailing list >Bioconductor at stat.math.ethz.ch >https://stat.ethz.ch/mailman/listinfo/bioconductor >Search the archives: >http://news.gmane.org/gmane.science.biology.informatics.conductor Jenny Drnevich, Ph.D. Functional Genomics Bioinformatics Specialist W.M. Keck Center for Comparative and Functional Genomics Roy J. Carver Biotechnology Center University of Illinois, Urbana-Champaign 330 ERML 1201 W. Gregory Dr. Urbana, IL 61801 USA ph: 217-244-7355 fax: 217-265-5066 e-mail: drnevich at uiuc.edu