Question: Problems accessing the Milan package through the vignettes Explorer
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gravatar for Fátima Núñez
16.4 years ago by
Fátima Núñez130 wrote:
Hello all, I am currently trying to install the Milan BioC course info and packages and I seem to be having a problem when trying to access the Milan package through the vignettes Explorer. Installation has been done with no error messages as instructed by the http://www.bioconductor.org/workshops/Milan/milan.html page. Also as instructed I type: > library(tkWidgets) Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material. To view, simply type: openVignette() For details on reading vignettes, see the openVignette help page. Creating a new generic function for "summary" in package reposTools Synching your local package management information ... Loading required package: widgetTools > library(Milan) > vExplorer() Loading required package: tools Loading required package: DynDoc <tcl> The problem arises when I the vignettes Explorer opens. The only packages that appear in the list are the following: affy, affycomp, affydata, AnnBuilder, annotate, Biobase, edd, genefilter, geneplotter, graph, hexbin, makecdfenv, marrayClasses, marrayInput, marrayNorm, marrayPlots, marrayTools, multtest, reposTools, ROC, SAGElyzer, tkWidgets, vsn and widgetTools and Milan is nowhere to be seen! Any ideas/suggestions? Am I doing something wrong? Has anybody else encountered this problem? Many thanks, F?tima _______ F?tima N??ez, PhD Centre for Cancer Research (CIC) University of Salamanca-CSIC Campus Unamuno 37007 Salamanca?????????????????????????????????????????????????? Spain Phone: + 34 923 294802 Fax:?????+ 34 923 294743 E-mail: fnunez@usal.es
ADD COMMENTlink modified 16.4 years ago by John Zhang2.9k • written 16.4 years ago by Fátima Núñez130
Answer: Problems accessing the Milan package through the vignettes Explorer
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gravatar for John Zhang
16.4 years ago by
John Zhang2.9k
John Zhang2.9k wrote:
After downloading the package, you have to install the package as you do with any R packages before using vExplorer. Have you done that? >From: F?tima N??ez <fnunez@usal.es> >To: <bioconductor@stat.math.ethz.ch> >Date: Thu, 12 Jun 2003 13:46:30 +0200 >MIME-Version: 1.0 >X-Priority: 3 (Normal) >X-MSMail-Priority: Normal >X-MIMEOLE: Produced By Microsoft MimeOLE V6.00.2800.1165 >Importance: Normal >X-Virus-Scanned: by amavisd-milter (http://amavis.org/) >X-Virus-Scanned: by amavisd-milter (http://amavis.org/) >Content-Transfer-Encoding: 8bit >X-MIME-Autoconverted: from quoted-printable to 8bit by stat.math.ethz.ch id h5CBokDF029297 >X-Spam-Status: No, hits=0.0 required=5.0 tests=none version=2.54 >X-Spam-Level: >X-Spam-Checker-Version: SpamAssassin 2.54 (1.174.2.17-2003-05-11-exp) >Cc: >Subject: [BioC] Problems accessing the Milan package through the vignettes Explorer >X-BeenThere: bioconductor@stat.math.ethz.ch >X-Mailman-Version: 2.1.2 >List-Id: The Bioconductor Project Mailing List <bioconductor.stat.math.ethz.ch> >List-Help: <mailto:bioconductor- request@stat.math.ethz.ch?subject="help"> >List-Post: <mailto:bioconductor@stat.math.ethz.ch> >List-Subscribe: <https: www.stat.math.ethz.ch="" mailman="" listinfo="" bioconductor="">, <mailto:bioconductor-request@stat.math.ethz.ch?subject=subscribe> >List-Archive: <https: www.stat.math.ethz.ch="" pipermail="" bioconductor=""> >List-Unsubscribe: <https: www.stat.math.ethz.ch="" mailman="" listinfo="" bioconductor="">, <mailto:bioconductor-request@stat.math.ethz.ch?subject=unsubscribe> > >Hello all, > >I am currently trying to install the Milan BioC course info and packages >and I seem to be having a problem when trying to access the Milan >package through the vignettes Explorer. Installation has been done with >no error messages as instructed by the >http://www.bioconductor.org/workshops/Milan/milan.html page. > >Also as instructed I type: > >> library(tkWidgets) >Loading required package: Biobase >Welcome to Bioconductor > Vignettes contain introductory material. To view, > simply type: openVignette() > For details on reading vignettes, see > the openVignette help page. >Creating a new generic function for "summary" in package >reposTools > >Synching your local package management information ... >Loading required package: widgetTools >> library(Milan) >> vExplorer() >Loading required package: tools >Loading required package: DynDoc ><tcl> > >The problem arises when I the vignettes Explorer opens. The only >packages that appear in the list are the following: > > >affy, affycomp, affydata, AnnBuilder, annotate, Biobase, edd, >genefilter, geneplotter, graph, hexbin, makecdfenv, marrayClasses, >marrayInput, marrayNorm, marrayPlots, marrayTools, multtest, reposTools, >ROC, SAGElyzer, tkWidgets, vsn and widgetTools > > >and Milan is nowhere to be seen! > > >Any ideas/suggestions? Am I doing something wrong? Has anybody else >encountered this problem? > >Many thanks, > >F?tima > >_______ >F?tima N??ez, PhD >Centre for Cancer Research (CIC) >University of Salamanca-CSIC >Campus Unamuno >37007 Salamanca?????????????????????????????????????????????????? >Spain >Phone: + 34 923 294802 >Fax:?????+ 34 923 294743 >E-mail: fnunez@usal.es > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor Jianhua Zhang Department of Biostatistics Dana-Farber Cancer Institute 44 Binney Street Boston, MA 02115-6084
ADD COMMENTlink written 16.4 years ago by John Zhang2.9k
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