Hi, as promised a few weeks ago, here is the second version of the R package siggenes that contains functions for performing both a SAM analysis and an Empirical Bayes Analysis (only for the two class cases). !!!!!! Please note that there is a patent pending for the SAM technology at Stanford University. !!!!!! Using a AMD Athlon 2000+ with 256MB RAM, the running times for a SAM Analysis are (m: genes, B: permutations): m=3226, B=100: ~13 sec m=3226, B=1000: ~57 sec m=7129, B=100: ~25 sec. I have programmed these R routines for my diploma thesis that can be downloaded from http://de.geocities.com/holgerschw/thesis.pdf The Application-Subchapters of the Chapters 5-8 contain examples of how the functions can be applied to a data set. Unfortunately, Yahoo limits the number of calls per day for a webpage. So if you get an error message when trying to download my thesis, please try again later. Feel free to send me comments and questions about this package. Greetings Holger -- -- -------------- next part -------------- A non-text attachment was scrubbed... Name: siggenes_0.3-5.tar.gz Type: application/x-gzip-compressed Size: 30365 bytes Desc: not available Url : https://www.stat.math.ethz.ch/pipermail/bioconductor/attachments /20030617/889f5baf/siggenes_0.3-5.tar-0001.bin -------------- next part -------------- A non-text attachment was scrubbed... Name: siggenes_0.3-5.zip Type: application/x-zip-compressed Size: 73548 bytes Desc: not available Url : https://www.stat.math.ethz.ch/pipermail/bioconductor/attachments /20030617/889f5baf/siggenes_0.3-5-0001.bin