affy package: accessing the mas5 scale factors
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Fenglong Liu ▴ 10
@fenglong-liu-2157
Last seen 9.6 years ago
I am using the bioconductor affy package to process a large number of CEL files to generate mas5 signal, mas5 PMA calls and rma signal, but I could not figure out a way to retrieve the scale factor values (sc=500, as a qc measure). I know in simpleaffy these values can be retrieved from sfs field; are the scale factor values accessible from affy package? from what field? Thanks / FL
affy simpleaffy PROcess affy simpleaffy PROcess • 842 views
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