help for siggene installation
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Ruma Sanyal ▴ 60
@ruma-sanyal-2133
Last seen 10.3 years ago
Dear all, I had been trying to install the siggene package, but was unable to do so. I tried loading the multtest package and was successful in doing so. Before installing the same, I had already loaded the package Biobase. Everytime I try installing the siggene package, the following error is encountered: Error: package 'multtest' does not have a name space Execution halted ERROR: lazy loading failed for package 'siggenes Can anyone help me out with the problem..?? Is there any different installation command for bioconductor packages, other than RCMD INSTALL ()...?? Looking forward for a quick reply. Thanks in advance, Ruma. Bioinformatics team C-DAC, NPSF Pune-7.
Biobase multtest Biobase multtest • 1.2k views
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Seth Falcon ★ 7.4k
@seth-falcon-992
Last seen 10.3 years ago
"ruma" <rumas at="" cdac.in=""> writes: > Dear all, > > I had been trying to install the siggene package, but was unable to do so. > I tried loading the multtest package and was successful in doing so. Before > installing the same, I had already loaded the package Biobase. > Everytime I try installing the siggene package, the following error is > encountered: > > Error: package 'multtest' does not have a name space > Execution halted > ERROR: lazy loading failed for package 'siggenes > > Can anyone help me out with the problem..?? > Is there any different installation command for bioconductor packages, other > than RCMD INSTALL ()...?? > > Looking forward for a quick reply. Please read about how to install Bioconductor packages and how to post questions to the mailing list: http://www.bioconductor.org/download http://www.bioconductor.org/docs/postingGuide.html It is difficult to provide more detailed help because you haven't told us much. As a start, I would: 1. Make sure you are using the latest R release 2.5.0 2. Follow the instructions to install siggenes using biocLite 3. If you have problems, read over the posting guide and tell us about them making sure to provide plenty of details so we can better help. + seth -- Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research Center http://bioconductor.org
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Hi I have installed R-2.5.0 on Linux(Redhat Enterprise 64bit o.s.) and have been trying to install the BioConductor packages without success. when I try to access the packages i get the following error: > source("http://bioconductor.org/biocLite.R") Error in file(file, "r", encoding = encoding) : unable to open connection In addition: Warning message: unable to connect to 'bioconductor.org' on port 80. I tried looking at the posts and tried using the To get R to connect to the proxy server, by giving the following(which has been suggested in the posts): Sys.putenv("http_proxy"="http://name_of_proxy_server") but that too gave the same error. Is there an easy way to overcome this problem? I have looked at the posts and it seems to be a firewall issue. Can you please help me solve this issue? Thanking you, Ruma.
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