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"marco zucchelli" <marco.bioc at="" gmail.com=""> writes: > Dear Bioc, > > can go stats be used without a microarray annotation, i.e. to test a set of > genes against a specified universe? >>From my understanding the GOHyperGParams accept a gene list, and a universe > (as entrez names). So a this point hyperGTest should > not use the the micorarray annotation anymore ? > > If this is not possible is there any other package for this kind of > test ? You can set the annotation to <what>LLMappings for <what> = human, mouse, or rat. The topGO package may also be of use to you. + seth -- Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research Center http://bioconductor.org