Using current GO data with Bioconductor
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@peter-robinson-529
Last seen 10.3 years ago
Dear Bioconductors, we are in the process of testing new routines for GO analysis and would like to use the same version of the gene_ontology.obo file for the Bioconductor routines as well as other software. Is there any way of importing a current version of this data into Bioconductor so it can be used with the other packages? Thanks, Peter
GO PROcess GO PROcess • 672 views
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Marc Carlson ★ 7.2k
@marc-carlson-2264
Last seen 8.4 years ago
United States
I believe that I have located the source files for gene_ontology.obo that go with the last release of BioConductor. This would provide you with a matching set of source and package for GO. If you are planning on changing code that looks at GO, then I suspect this will do the trick for you. Please reply to my off list email if you would like the source file we used and I will send it on. Marc Peter Robinson wrote: > Dear Bioconductors, > > we are in the process of testing new routines for GO analysis and would like to use the same version of the gene_ontology.obo file for the Bioconductor routines as well as other software. Is there any way of importing a current version of this data into Bioconductor so it can be used with the other packages? > > Thanks, Peter > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > > >
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