How to use KEGG in Bioconductor
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mousheng xu ▴ 10
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John Zhang ★ 2.9k
@john-zhang-6
Last seen 9.9 years ago
> >* List all KEGG pathways >library(KEGG) >pathways <- ls(KEGGPATHNAME2ID) > >* For each KEGG pathways, give me a list of gene ids (whatever IDs that I >can use to link to Refseq IDs or HGNC gene symbols). for the first element of pathways for human as an example: >geneids <- get(paste("hsa", get(pathways[1], KEGGPATHNAME2ID), sep = ""), KEGGPATHID2EXTID) > >Any help will be highly appareicated. > >Thanks! > >-- Mousheng Xu > > [[alternative HTML version deleted]] > >_______________________________________________ >Bioconductor mailing list >Bioconductor at stat.math.ethz.ch >https://stat.ethz.ch/mailman/listinfo/bioconductor >Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor Jianhua Zhang Department of Medical Oncology Dana-Farber Cancer Institute 44 Binney Street Boston, MA 02115-6084
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