Hi list, can anyone told me how this error could happen and how to solve this? To begin, type affylmGUI() or use the pull-down menu. Searching for user-defined affylmGUI commands in C:/PROGRA~1/R/R-25~1.1/library/affylmGUI/etc ... Error in structure(.External("dotTclObjv", objv, PACKAGE = "tcltk"), class = "tclObj") : [tcl] invalid command name ".1.1.9". Error in structure(.External("dotTclObjv", objv, PACKAGE = "tcltk"), class = "tclObj") : [tcl] invalid command name ".1.1.12". > sessionInfo() R version 2.5.1 (2007-06-27) i386-pc-mingw32 locale: LC_COLLATE=Chinese_People's Republic of China.936;LC_CTYPE=Chinese_People's Republic of China.936;LC_MONETARY=Chinese_People's Republic of China.936;LC_NUMERIC=C;LC_TIME=Chinese_People's Republic of China.936 attached base packages: [1] "tools" "tcltk" "stats" "graphics" "grDevices" "utils" "datasets" "methods" "base" other attached packages: mouse4302cdf affylmGUI affy affyio Biobase limma "1.16.0" "1.10.4" "1.14.2" "1.4.1" "1.14.1" "2.10.5" > Thanks! -- Daofeng Li,PhD Candidate China Agricultural University

Hi Daofeng, I have the same versions of packages as you and it all works fine. I don't recognise the error messages you are getting. Have you installed Tcl/Tk on your Windows computer? I don't have experience of using it in the Chinese Locale. My sessionInfo is below: =================================== > sessionInfo() R version 2.5.1 (2007-06-27) i386-pc-mingw32 locale: LC_COLLATE=English_Australia.1252;LC_CTYPE=English_Australia.1252;LC_M ONETARY=English_Australia.1252;LC_NUMERIC=C;LC_TIME=English_Australia. 1252 attached base packages: [1] "tools" "tcltk" "stats" "graphics" "grDevices" "datasets" "utils" "methods" [9] "base" other attached packages: affylmGUI affy affyio Biobase limma "1.10.4" "1.14.2" "1.4.1" "1.14.1" "2.10.5" =================================== The affylmGUI web page at http://bioinf.wehi.edu.au/affylmGUI/ was updated recently (except for R-2.5.1) and gives clear descriptions on all the set up needed for Windows Mac and Linux, hope that helps, Keith ======================== Keith Satterley Bioinformatics Division The Walter and Eliza Hall Institute of Medical Research Parkville, Melbourne, Victoria, Australia ======================= Daofeng Li wrote: > Hi list, > > can anyone told me how this error could happen and how to solve this? > > To begin, type affylmGUI() or use the pull-down menu. > > Searching for user-defined affylmGUI commands in > C:/PROGRA~1/R/R-25~1.1/library/affylmGUI/etc ... > Error in structure(.External("dotTclObjv", objv, PACKAGE = "tcltk"), > class = "tclObj") : > [tcl] invalid command name ".1.1.9". > > Error in structure(.External("dotTclObjv", objv, PACKAGE = "tcltk"), > class = "tclObj") : > [tcl] invalid command name ".1.1.12". >> sessionInfo() > R version 2.5.1 (2007-06-27) > i386-pc-mingw32 > > locale: > LC_COLLATE=Chinese_People's Republic of > China.936;LC_CTYPE=Chinese_People's Republic of > China.936;LC_MONETARY=Chinese_People's Republic of > China.936;LC_NUMERIC=C;LC_TIME=Chinese_People's Republic of China.936 > > attached base packages: > [1] "tools" "tcltk" "stats" "graphics" "grDevices" > "utils" "datasets" "methods" "base" > > other attached packages: > mouse4302cdf affylmGUI affy affyio Biobase limma > "1.16.0" "1.10.4" "1.14.2" "1.4.1" "1.14.1" "2.10.5" > > Thanks! >