Question: marrayInfo in BioConductor 1.2
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gravatar for White, Charles E WRAIR-Wash DC
16.4 years ago by
The Release Package 1.2 page on the BioConductor web site indicates that this release "Requires R 1.7.1 or later." However, running the installation script generates numerous messages that the packages were developed for R 1.7.0, running marrayInfo under 1.7.1 generates the error messages listed below, and the same commands run under 1.7.0 work fine. I recommend that the text near the top of the BioConductor Release Package 1.2 page be modified to read: "Requires R 1.7.0" Thanks. > library(marrayInput) Loading required package: marrayClasses Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material. To view, simply type: openVignette() For details on reading vignettes, see the openVignette help page. Creating a new generic function for "summary" in package reposTools Synching your local package management information ... Creating a new generic function for "print" in package marrayClasses Creating a new generic function for "rbind" in package marrayClasses Creating a new generic function for "cbind" in package marrayClasses > Monkey.info <- read.Galfile(galfile="Revised sethi-sh 136prg cew.gal") Error in validObject(.Object) : Invalid "marrayInfo" object: Invalid object for slot "maInfo" in class "marrayInfo": got class "NULL", should be or extend class "data.frame" >
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ADD COMMENTlink modified 16.4 years ago by Jeff Gentry3.9k • written 16.4 years ago by White, Charles E WRAIR-Wash DC70
Answer: marrayInfo in BioConductor 1.2
0
gravatar for Jeff Gentry
16.4 years ago by
Jeff Gentry3.9k
Jeff Gentry3.9k wrote:
On Tue, 15 Jul 2003, White, Charles E WRAIR-Wash DC wrote: > The Release Package 1.2 page on the BioConductor web site indicates that > this release "Requires R 1.7.1 or later." However, running the installation > script generates numerous messages that the packages were developed for R > 1.7.0, Yes ... apparently the R being used to build the Windows packages was never completely switched to 1.7.1 but rather the R-1.7.0(Patched) from the day before the release of 1.7.1. This will be changed as of tommorow morning. > running marrayInfo under 1.7.1 generates the error messages listed > below, and the same commands run under 1.7.0 work fine. I recommend that the That shouldn't have anything to do with the fact that the package was built under 1.7.0, but rather most likely involves tightre checking in 1.7.1. Perhaps one of the marray* folks know something about this? -J
ADD COMMENTlink written 16.4 years ago by Jeff Gentry3.9k
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