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Question: Error in loading package preprocessCore
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gravatar for Weiwei Shi
10.6 years ago by
Weiwei Shi1.2k
Weiwei Shi1.2k wrote:
hi, there: recently my laptop was burned so I bot a new one; when I tried to use affy package, I met the following problem: > library(affy) Loading required package: preprocessCore Error in dyn.load(file, ...) : unable to load shared library '/Library/Frameworks/R.framework/Versions/2.6/Resources/library/prepro cessCore/libs/i386/preprocessCore.so': dlopen(/Library/Frameworks/R.framework/Versions/2.6/Resources/librar y/preprocessCore/libs/i386/preprocessCore.so, 5): Library not loaded: /usr/local/lib/libgfortran.2.dylib Referenced from: /Library/Frameworks/R.framework/Versions/2.6/Resources/library/preproc essCore/libs/i386/preprocessCore.so Reason: image not found Error: package 'preprocessCore' could not be loaded > version _ platform i386-apple-darwin8.10.1 arch i386 os darwin8.10.1 system i386, darwin8.10.1 status Patched major 2 minor 6.0 year 2007 month 11 day 09 svn rev 43408 language R version.string R version 2.6.0 Patched (2007-11-09 r43408) > sessionInfo() R version 2.6.0 Patched (2007-11-09 r43408) i386-apple-darwin8.10.1 locale: en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] tools stats graphics grDevices utils datasets methods base other attached packages: [1] affyio_1.5.11 Biobase_1.16.1 -- Weiwei Shi, Ph.D Research Scientist GeneGO, Inc. "Did you always know?" "No, I did not. But I believed..." ---Matrix III
ADD COMMENTlink modified 10.6 years ago by Kasper Daniel Hansen6.3k • written 10.6 years ago by Weiwei Shi1.2k
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gravatar for Kasper Daniel Hansen
10.6 years ago by
United States
Kasper Daniel Hansen6.3k wrote:
You need to install gfortran. When you install R from the CRAN binary there is a button marked "customize". You will need to click that and choose gfortran. If you are running Leopard (which you might be, given that it is a new machine), there might be other issues, see r-sig-mac. Kasper On Nov 14, 2007, at 12:29 AM, Weiwei Shi wrote: > hi, there: > > recently my laptop was burned so I bot a new one; when I tried to use > affy package, I met the following problem: > > >> library(affy) > Loading required package: preprocessCore > Error in dyn.load(file, ...) : > unable to load shared library > '/Library/Frameworks/R.framework/Versions/2.6/Resources/library/ > preprocessCore/libs/i386/preprocessCore.so': > dlopen(/Library/Frameworks/R.framework/Versions/2.6/Resources/ > library/preprocessCore/libs/i386/preprocessCore.so, > 5): Library not loaded: /usr/local/lib/libgfortran.2.dylib > Referenced from: > /Library/Frameworks/R.framework/Versions/2.6/Resources/library/ > preprocessCore/libs/i386/preprocessCore.so > Reason: image not found > Error: package 'preprocessCore' could not be loaded > >> version > _ > platform i386-apple-darwin8.10.1 > arch i386 > os darwin8.10.1 > system i386, darwin8.10.1 > status Patched > major 2 > minor 6.0 > year 2007 > month 11 > day 09 > svn rev 43408 > language R > version.string R version 2.6.0 Patched (2007-11-09 r43408) > >> sessionInfo() > R version 2.6.0 Patched (2007-11-09 r43408) > i386-apple-darwin8.10.1 > > locale: > en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 > > attached base packages: > [1] tools stats graphics grDevices utils datasets > methods base > > other attached packages: > [1] affyio_1.5.11 Biobase_1.16.1 > > > -- > Weiwei Shi, Ph.D > Research Scientist > GeneGO, Inc. > > "Did you always know?" > "No, I did not. But I believed..." > ---Matrix III > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/ > gmane.science.biology.informatics.conductor
ADD COMMENTlink written 10.6 years ago by Kasper Daniel Hansen6.3k
Thanks. I thot I missed xcode... you know, when your computer crashed, you probably forgot which was lost... I have leopard at hand but I will install it when R has stable version for that, :) On 11/13/07, Kasper Daniel Hansen <khansen at="" stat.berkeley.edu=""> wrote: > You need to install gfortran. When you install R from the CRAN binary > there is a button marked "customize". You will need to click that and > choose gfortran. > > If you are running Leopard (which you might be, given that it is a > new machine), there might be other issues, see r-sig-mac. > > Kasper > > On Nov 14, 2007, at 12:29 AM, Weiwei Shi wrote: > > > hi, there: > > > > recently my laptop was burned so I bot a new one; when I tried to use > > affy package, I met the following problem: > > > > > >> library(affy) > > Loading required package: preprocessCore > > Error in dyn.load(file, ...) : > > unable to load shared library > > '/Library/Frameworks/R.framework/Versions/2.6/Resources/library/ > > preprocessCore/libs/i386/preprocessCore.so': > > dlopen(/Library/Frameworks/R.framework/Versions/2.6/Resources/ > > library/preprocessCore/libs/i386/preprocessCore.so, > > 5): Library not loaded: /usr/local/lib/libgfortran.2.dylib > > Referenced from: > > /Library/Frameworks/R.framework/Versions/2.6/Resources/library/ > > preprocessCore/libs/i386/preprocessCore.so > > Reason: image not found > > Error: package 'preprocessCore' could not be loaded > > > >> version > > _ > > platform i386-apple-darwin8.10.1 > > arch i386 > > os darwin8.10.1 > > system i386, darwin8.10.1 > > status Patched > > major 2 > > minor 6.0 > > year 2007 > > month 11 > > day 09 > > svn rev 43408 > > language R > > version.string R version 2.6.0 Patched (2007-11-09 r43408) > > > >> sessionInfo() > > R version 2.6.0 Patched (2007-11-09 r43408) > > i386-apple-darwin8.10.1 > > > > locale: > > en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 > > > > attached base packages: > > [1] tools stats graphics grDevices utils datasets > > methods base > > > > other attached packages: > > [1] affyio_1.5.11 Biobase_1.16.1 > > > > > > -- > > Weiwei Shi, Ph.D > > Research Scientist > > GeneGO, Inc. > > > > "Did you always know?" > > "No, I did not. But I believed..." > > ---Matrix III > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor at stat.math.ethz.ch > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: http://news.gmane.org/ > > gmane.science.biology.informatics.conductor > > -- Weiwei Shi, Ph.D Research Scientist GeneGO, Inc. "Did you always know?" "No, I did not. But I believed..." ---Matrix III
ADD REPLYlink written 10.6 years ago by Weiwei Shi1.2k
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