Tom "spot" Callaway wrote: > On Wed, 2007-12-05 at 19:47 -0800, D.Enrique ESCOBAR ESPINOZA wrote: >> hi, >> >> In an effort to help the biolinux community >> www.biolinux.org , >> I put at your disposition >> R-BioC for R 2.5.x for fedora core 6. >> Comments for improvement will be welcome. >> It is not an official fedora rpm because fedora plans to support only >> R. >> Unfortunatly is the only fc6 rpm for now but they are more for >> previous fc > For example, Fedora already has R-abind. > > I know that we have some active efforts in progress to package up all of > the BioConductor RPMS, anyone want to chime in with a status report? > Hi Fedora supports only R ? Below is an output of my yum list R-\* They are not all on the fedora repo yet, but there is several review in progress and more to come. You can see them all there http://pingoured.fr/public/fedora/SPECS/ available for Fedora 7 and Fedora 8 in i386 and x86_64. Would you like to be involved in this project (getting bioconductor on Fedora) ? You can also have a look at these two pages : http://fedoraproject.org/wiki/PackageMaintainers/Join http://fedoraproject.org/wiki/Packaging/R Regards, Pierre ~pingou Installed Packages R.x86_64 2.6.1-1.fc8 installed R-ACME.x86_64 1.5.0-1.fc8 installed R-ALL.noarch 1.4.3-1.fc8 installed R-AnnotationDbi.noarch 1.1.6-1.fc8 installed R-BSgenome.noarch 1.7.0-1.fc8 installed R-BSgenome.Celegans.UCSC.ce2.noarch 1.2.0-3.fc8 installed R-BSgenome.Dmelanogaster.FlyBase.r51.noa 1.2.0-2.fc8 installed R-Biobase.x86_64 1.17.3-1.fc8 installed R-Biostrings.x86_64 2.7.2-1.fc8 installed R-BufferedMatrix.x86_64 1.3.0-1.fc8 installed R-BufferedMatrix-devel.x86_64 1.3.0-1.fc8 installed R-DBI.noarch 0.2-1.fc8 installed R-DynDoc.noarch 1.17.0-1.fc8 installed R-GO.noarch 2.0.1-1.fc8 installed R-KEGG.noarch 2.0.1-1.fc8 installed R-R2HTML.noarch 1.58-1.fc8 installed R-RColorBrewer.noarch 1.0-1.fc8 installed R-RSQLite.x86_64 0.5-1.fc8 installed R-RScaLAPACK.x86_64 0.5.1-10.fc8.1 installed R-RUnit.noarch 0.4.17-1.fc8 installed R-Rgraphviz.x86_64 1.17.7-1.fc8 installed R-SparseM.x86_64 0.74-1.fc8 installed R-XML.x86_64 1.9-1.fc8 installed R-abind.noarch 1.1-1.fc8 installed R-acepack.x86_64 1.3-2.fc8.1 installed R-affy.x86_64 1.17.2-2.fc8 installed R-affyPLM.x86_64 1.15.0-1.fc8 installed R-affyQCReport.noarch 1.17.0-1.fc8 installed R-affydata.noarch 1.11.2-1.fc8 installed R-affyio.x86_64 1.7.2-1.fc8 installed R-annaffy.noarch 1.11.0-1.fc8 installed R-annotate.noarch 1.17.1-3.fc8 installed R-devel.x86_64 2.6.1-1.fc8 installed R-fibroEset.noarch 1.4.2-1.fc8 installed R-gcrma.x86_64 2.11.0-1.fc8 installed R-genefilter.x86_64 1.17.2-1.fc8 installed R-geneplotter.noarch 1.17.0-1.fc8 installed R-graph.x86_64 1.17.10-1.fc8 installed R-hdf5.x86_64 1.6.6-2.fc8 installed R-hgu133a.noarch 1.16.0-1.fc8 installed R-hgu133acdf.noarch 1.16.0-1.fc8 installed R-hgu95aprobe.noarch 1.16.4-1.fc8 installed R-hgu95av2.noarch 1.16.0-1.fc8 installed R-hgu95av2.db.noarch 2.0.2-1.fc8 installed R-hgu95av2cdf.noarch 1.16.0-1.fc8 installed R-hgu95av2probe.noarch 1.16.3-2.fc8 installed R-hsahomology.noarch 1.16.0-1.fc8 installed R-hu6800.noarch 1.16.0-1.fc8 installed R-hu6800cdf.noarch 1.16.0-1.fc8 installed R-hu6800probe.noarch 1.16.2-1.fc8 installed R-limma.noarch 2.13.1-1.fc8 installed R-mAr.x86_64 1.1-11.fc8 installed R-maanova.x86_64 1.4.0-3.fc8 installed R-matchprobes.x86_64 1.11.0-1.fc8 installed R-multcomp.noarch 0.992-3.fc8 installed R-multtest.x86_64 1.19.0-1.fc8 installed R-mvtnorm.x86_64 0.8-3.fc8 installed R-pls.noarch 2.0-4.fc8 installed R-preprocessCore.x86_64 1.1.0-2.fc8 installed R-preprocessCore-devel.x86_64 1.1.0-2.fc8 installed R-qvalue.noarch 1.13.0-1.fc8 installed R-rae230a.noarch 1.16.0-2.fc8 installed R-rae230aprobe.noarch 1.16.2-2.fc8 installed R-randomForest.x86_64 4.5-1.fc8 installed R-rlecuyer.x86_64 0.1-3.fc8 installed R-siggenes.noarch 1.13.0-1.fc8 installed R-simpleaffy.x86_64 2.15.02-1.fc8 installed R-simpleaffy-devel.x86_64 2.15.02-1.fc8 installed R-systemfit.noarch 0.8-6.fc8 installed R-tkWidgets.noarch 1.16.0-1.fc8 installed R-vsn.x86_64 3.3.6-1.fc8 installed R-waveslim.x86_64 1.6-4.fc8 installed R-wavethresh.x86_64 2.2-7.fc8 installed R-widgetTools.noarch 1.15.0-1.fc8 installed R-xlahomology.noarch 1.16.0-1.fc8 installed R-xtable.noarch 1.5-1.fc8 installed

Hi Oscar, oscar wrote: > Enrique, > I am an inexperienced linux user, so this question may be silly: > My linux is opensuse 10.2, would the rpm you made work for this linux version? Unfortunately, RPMs built for a given RPM-based Linux distribution generally don't work with another RPM-based Linux distribution. Not even for 2 different versions of the same distribution e.g. there is no guarantee that an RPM made for openSUSE 10.2 will work for openSUSE 10.3, especially when it contains binary objects (e.g. *.so files). You might have more luck with the *.noarch RPMs though. H.