Could anybody help? When installing webbioc as following, I found warnings and errors. The R and Bioconductor information are showing as following. Thanks. Ron > source("http://bioconductor.org/biocLite.R") > biocLite("webbioc") Running biocinstall version 2.1.8 with R version 2.6.1 Your version of R requires version 2.1 of Bioconductor. trying URL 'http://bioconductor.org/packages/2.1/bioc/src/contrib/webbioc_1.10.0. tar.gz' Content type 'application/x-gzip' length 146240 bytes (142 Kb) opened URL ================================================== downloaded 142 Kb /usr/local/lib/R/library * Installing *source* package 'webbioc' ... ** R ** inst ** preparing package for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: affy Loading required package: affyio Loading required package: preprocessCore Loading required package: multtest Loading required package: survival Loading required package: splines Loading required package: annaffy Loading required package: GO Loading required package: KEGG Loading required package: vsn Loading required package: limma Loading required package: gcrma Loading required package: matchprobes Loading required package: qvalue Loading required package: tcltk Loading Tcl/Tk interface ... Warning in fun(...) : no DISPLAY variable so Tk is not available done ** help >>> Building/Updating help pages for package 'webbioc' Formats: text html latex example installReps text html latex Note: unmatched right brace in 'mt.wrapper' on or after line 84 mt.wrapper text html latex ** building package indices ... * DONE (webbioc) The downloaded packages are in /tmp/RtmpQA2Qd3/downloaded_packages Updating HTML index of packages in '.Library'

Apparently the TclTk package cannot load because you do not have X11 (I guess) capability. If you are logging in remotely try using ssh -X (or -Y) and setting your DISPLAY variable. Kasper On Jan 18, 2008, at 3:28 PM, Ron wrote: > Could anybody help? When installing webbioc as following, I found > warnings and errors. The R and Bioconductor information are showing as > following. > > Thanks. > > Ron > >> source("http://bioconductor.org/biocLite.R") >> biocLite("webbioc") > Running biocinstall version 2.1.8 with R version 2.6.1 > Your version of R requires version 2.1 of Bioconductor. > trying URL > 'http://bioconductor.org/packages/2.1/bioc/src/contrib/ > webbioc_1.10.0.tar.gz' > Content type 'application/x-gzip' length 146240 bytes (142 Kb) > opened URL > ================================================== > downloaded 142 Kb > > /usr/local/lib/R/library > * Installing *source* package 'webbioc' ... > ** R > ** inst > ** preparing package for lazy loading > Loading required package: Biobase > Loading required package: tools > > Welcome to Bioconductor > > Vignettes contain introductory material. To view, type > 'openVignette()'. To cite Bioconductor, see > 'citation("Biobase")' and for packages 'citation(pkgname)'. > > Loading required package: affy > Loading required package: affyio > Loading required package: preprocessCore > Loading required package: multtest > Loading required package: survival > Loading required package: splines > Loading required package: annaffy > Loading required package: GO > Loading required package: KEGG > Loading required package: vsn > Loading required package: limma > Loading required package: gcrma > Loading required package: matchprobes > Loading required package: qvalue > Loading required package: tcltk > Loading Tcl/Tk interface ... Warning in fun(...) : no DISPLAY variable > so Tk is not available > done > ** help >>>> Building/Updating help pages for package 'webbioc' > Formats: text html latex example > installReps text html latex > Note: unmatched right brace in 'mt.wrapper' on or after line 84 > mt.wrapper text html latex > ** building package indices ... > * DONE (webbioc) > > The downloaded packages are in > /tmp/RtmpQA2Qd3/downloaded_packages > Updating HTML index of packages in '.Library' > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/ > gmane.science.biology.informatics.conductor