Affy EXON Array: iterPLIER or RMA
0
0
Entering edit mode
juancui ▴ 10
@juancui-2785
Last seen 8.4 years ago
Hi, Michal. I feel excited when I saw your message about the data transfer from APT to Exonmap. I really need to try this way since the datasize I have is too huge to be load by read.exon(). Could you please show me some ideas of what kind of format for exonmap to accept the fils(probeset/gene expression summary file from APT)? and what function will be used for this data import? I cannot find this information elsewhere and really hope to get help from you. Thanks a lot. Juan *********************** " However - it is also possible (as Daniel suggests) - to get ready numbers from APT (or its derivatives - ExACT or expression console), import it into R via a flat file and use exonmap just to process gene/transcript/exon/probeset annotations. I was doing it myself happily a couple of times. As for annotations in XMAP database (so in exonmap) - they are genome-based and independent from Affy - thus you can get for example more detailed information on genome multiple targeting (ie. cross-hybridization)." ********************* Computational Systems Biology Lab Department of Biochemistry & Molecular Biology Davison Life Sciences Building, Room A134 University of Georgia Athens GA 30602-7229 Phone: (706) 542-3930 Fax: (706) 542-9751 E-mail: <mailto:juancui@csbl.bmb.uga.edu> juancui@csbl.bmb.uga.edu [[alternative HTML version deleted]]
affy exonmap affy exonmap • 543 views
ADD COMMENT

Login before adding your answer.

Traffic: 339 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6