Hi, An incomplete selection is here: Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics. 2003 Apr;4(2):249-64. and a number of other papers by the same first author. David Rocke and Blythe Durbin have a number of papers, as far as I know they, as well as Trey Ideker were the first to use a two- component (constant + proportional) error model, see e.g. J Comp. Biol. 8 page 557. http://www.cipic.ucdavis.edu/~dmrocke/preprints.html The first three links in the "publications" section of my webpage (see http address below) may also be useful, as well as bioconductor's "vsn" package and its vignette. And recently there was a workshop http://www.affymetrix.com/corporate/events/seminar/microarray_workshop .affx with some relevant talks, esp. on approaches to the incorporation of biochemical probe properties into the modeling. Best regards Wolfgang ------------------------------------- Wolfgang Huber Division of Molecular Genome Analysis German Cancer Research Center Heidelberg, Germany Phone: +49 6221 424709 Fax: +49 6221 42524709 Http: www.dkfz.de/mga/whuber ------------------------------------- On Sat, 30 Aug 2003, Djork Clevert wrote: > Hello, > > is there anyone who can recommend me some good articles dealing with > error models for expression array normalization? > > > Thanks, > > Djork > > |-|-| > > + djork clevert | kolberger str. 12-13 | d-13357 berlin >

more details about RMAs error model and fitting procedures are here: http://128.32.135.2/users/bolstad/ComputeRMAFAQ/ComputeRMAFAQ.html On Tue, 2 Sep 2003 w.huber@dkfz-heidelberg.de wrote: > Hi, > > An incomplete selection is here: > > Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf > U, Speed TP. Exploration, normalization, and summaries of high density > oligonucleotide array probe level data. Biostatistics. 2003 > Apr;4(2):249-64. > and a number of other papers by the same first author. > > David Rocke and Blythe Durbin have a number of papers, as far as I > know they, as well as Trey Ideker were the first to use a two- component > (constant + proportional) error model, see e.g. J Comp. Biol. 8 page 557. > http://www.cipic.ucdavis.edu/~dmrocke/preprints.html > > The first three links in the "publications" section of my webpage (see > http address below) may also be useful, as well as bioconductor's "vsn" > package and its vignette. > > And recently there was a workshop > http://www.affymetrix.com/corporate/events/seminar/microarray_worksh op.affx > with some relevant talks, esp. on approaches to the > incorporation of biochemical probe properties into the modeling. > > Best regards > Wolfgang > > ------------------------------------- > Wolfgang Huber > Division of Molecular Genome Analysis > German Cancer Research Center > Heidelberg, Germany > Phone: +49 6221 424709 > Fax: +49 6221 42524709 > Http: www.dkfz.de/mga/whuber > ------------------------------------- > > On Sat, 30 Aug 2003, Djork Clevert wrote: > > > Hello, > > > > is there anyone who can recommend me some good articles dealing with > > error models for expression array normalization? > > > > > > Thanks, > > > > Djork > > > > |-|-| > > > > + djork clevert | kolberger str. 12-13 | d-13357 berlin > > > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor >