Moderator: Wolfgang Huber
Wolfgang Huber ♦ 13k
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- EMBL European Molecular Biology Laboratory
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- Joined:
- 15 years, 1 month ago
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Posts by Wolfgang Huber
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... I can reproduce this. Andrzej is away until Wednesday. It seems possible that the problem has to do with code in BiocStyle/R/auth_affil.R.
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written 5 days ago by
Wolfgang Huber ♦ 13k
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... Why don't you want to update to a newer R (e.g. 3.4.1 is current)?
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written 14 days ago by
Wolfgang Huber ♦ 13k
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... Rustavo
please first update your R, and use biocLite to install all needed packages. Just to avoid that you're suffering from version mismatches between your installed packages, or that your particular problem has already been fixed.
Wolfgang
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written 14 days ago by
Wolfgang Huber ♦ 13k
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... Your R version (3.1.2) is badly out of date. You'll have more fun with a more recent version, e.g. the current version is 3.4.1, see https://cran.r-project.org/
Also, if you haven't, consider using R-Studio, it makes many things around using R much easier.
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written 14 days ago by
Wolfgang Huber ♦ 13k
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Answer:
A: name of column in R
... You might want to read the R intro, esp. the chapter Reading data from files, and you might enjoy the readr package.
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written 14 days ago by
Wolfgang Huber ♦ 13k
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... Did you already see the function read.FCS in the flowCore package?
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written 21 days ago by
Wolfgang Huber ♦ 13k
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... Hello cbose2805!
We believe that this post does not fit the main topic of this site.
Too vague / unintelligible
For this reason we have closed your question. This allows us to keep the site focused
on the topics that the community can help with.
If you disagree please tell us why in a reply be ...
written 24 days ago by
Wolfgang Huber ♦ 13k
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... "Given this is an explicit design choice it would be nice if the library suggested that as a reason for the failure, rather than simply reporting it was unable to open the file, but you can’t have everything."
Could h5ls, h5read etc. in the rhdf5 package catch the problem and emit a helpful error m ...
written 24 days ago by
Wolfgang Huber ♦ 13k
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... Great detective work by Mike.
For background, perhaps this is related to the infamous LF vs CR + LF issue (see e.g. https://winscp.net/eng/docs/faq_line_breaks)
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written 27 days ago by
Wolfgang Huber ♦ 13k
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... You say "i was not succesful" but not really what you consider your problem is...
However, I'd recommend taking a much better approach, namely use Rmarkdown (or knitr) to prepare your analysis script, and use PDF as the output format.
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written 5 weeks ago by
Wolfgang Huber ♦ 13k
Latest awards to Wolfgang Huber
Scholar
6 weeks ago,
created an answer that has been accepted.
For A: Nonspecific filtering of microarray data
Popular Question
4 months ago,
created a question with more than 1,000 views.
For Bioconductor-related papers -- special F1000Research collection for Bioc2016
Teacher
4 months ago,
created an answer with at least 3 up-votes.
For A: package specifically dedicated to a manuscript
Scholar
4 months ago,
created an answer that has been accepted.
For A: DESeq2 interacting with agricolae
Teacher
4 months ago,
created an answer with at least 3 up-votes.
For A: package specifically dedicated to a manuscript
Teacher
15 months ago,
created an answer with at least 3 up-votes.
For A: Processing imaging data from high throughput compound screen with EBImage
Teacher
15 months ago,
created an answer with at least 3 up-votes.
For A: package specifically dedicated to a manuscript
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15 months ago,
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For A: plotMA for unshrunken LFC in deseq2
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15 months ago,
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For A: arrayQualityMetrics error: Error: Unknown parameters: cex.axis
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15 months ago,
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For A: How is the mean-variance plot calculated?
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For A: DESeq2 interacting with agricolae
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15 months ago,
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16 months ago,
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For A: Deseq2 error estimating size factors -- zeros in count matrix
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17 months ago,
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For A: arrayQualityMetrics error: Error: Unknown parameters: cex.axis
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18 months ago,
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For A: arrayQualityMetrics error: Error: Unknown parameters: cex.axis
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19 months ago,
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For A: plotMA for unshrunken LFC in deseq2
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2.0 years ago,
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For A: rounding issues using the VSN package
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For A: rounding issues using the VSN package
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2.6 years ago,
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For A: arrayQualityMetrics: "All SVG style attribute must have length 1" and other erro
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