Moderator: Wolfgang Huber

gravatar for Wolfgang Huber
Reputation:
12,590
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Location:
EMBL European Molecular Biology Laboratory
Website:
http://www.embl.de/res...
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Google Scholar Page
Last seen:
4 days, 22 hours ago
Joined:
15 years, 1 month ago
Email:
w*****@embl.de

Posts by Wolfgang Huber

<prev • 1,323 results • page 1 of 133 • next >
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Comment: C: Duplicated author affiliations in BiocStyle-based HTML document
... I can reproduce this. Andrzej is away until Wednesday. It seems possible that the problem has to do with code in BiocStyle/R/auth_affil.R. ...
written 5 days ago by Wolfgang Huber13k
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Comment: C: DESeq2 installing error: S4Vectors cannot be unloaded; anyone?
... Why don't you want to update to a newer R (e.g. 3.4.1 is current)? ...
written 14 days ago by Wolfgang Huber13k
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Answer: A: FourCSeq - errors in plotZScores
... Rustavo please first update your R, and use biocLite to install all needed packages. Just to avoid that you're suffering from version mismatches between your installed packages, or that your particular problem has already been fixed. Wolfgang   ...
written 14 days ago by Wolfgang Huber13k
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Comment: C: Error message that there is no package called Biobase
... Your R version (3.1.2) is badly out of date. You'll have more fun with a more recent version, e.g. the current version is 3.4.1, see https://cran.r-project.org/ Also, if you haven't, consider using R-Studio, it makes many things around using R much easier. ...
written 14 days ago by Wolfgang Huber13k
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Answer: A: name of column in R
... You might want to read the R intro, esp. the chapter Reading data from files, and you might enjoy the readr package. ...
written 14 days ago by Wolfgang Huber13k
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Answer: A: How to extract a numeric matrix of the raw measurement values from the FCS file?
... Did you already see the function read.FCS in the flowCore package? ...
written 21 days ago by Wolfgang Huber13k
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Comment: C: Microarray analysis regarding the raw data and P-value
... Hello cbose2805! We believe that this post does not fit the main topic of this site. Too vague / unintelligible For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If you disagree please tell us why in a reply be ...
written 24 days ago by Wolfgang Huber13k
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Comment: C: R: error while reading .h5 files from R using rdhf5 package
... "Given this is an explicit design choice it would be nice if the library suggested that as a reason for the failure, rather than simply reporting it was unable to open the file, but you can’t have everything." Could h5ls, h5read etc. in the rhdf5 package catch the problem and emit a helpful error m ...
written 24 days ago by Wolfgang Huber13k
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Answer: A: R: error while reading .h5 files from R using rdhf5 package
... Great detective work by Mike. For background, perhaps this is related to the infamous LF vs CR + LF issue (see e.g. https://winscp.net/eng/docs/faq_line_breaks) ...
written 27 days ago by Wolfgang Huber13k
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Answer: A: Save multiple plots into single pdf from Deseq2 analysis?
... You say "i was not succesful" but not really what you consider your problem is... However, I'd recommend taking a much better approach, namely use Rmarkdown (or knitr) to prepare your analysis script, and use PDF as the output format.   ...
written 5 weeks ago by Wolfgang Huber13k

Latest awards to Wolfgang Huber

Scholar 6 weeks ago, created an answer that has been accepted. For A: Nonspecific filtering of microarray data
Popular Question 4 months ago, created a question with more than 1,000 views. For DESeq2
Popular Question 4 months ago, created a question with more than 1,000 views. For Bioconductor-related papers -- special F1000Research collection for Bioc2016
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: package specifically dedicated to a manuscript
Scholar 4 months ago, created an answer that has been accepted. For A: DESeq2 interacting with agricolae
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: package specifically dedicated to a manuscript
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: Processing imaging data from high throughput compound screen with EBImage
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: package specifically dedicated to a manuscript
Scholar 15 months ago, created an answer that has been accepted. For A: plotMA for unshrunken LFC in deseq2
Scholar 15 months ago, created an answer that has been accepted. For A: arrayQualityMetrics error: Error: Unknown parameters: cex.axis
Scholar 15 months ago, created an answer that has been accepted. For A: How is the mean-variance plot calculated?
Scholar 15 months ago, created an answer that has been accepted. For A: DESeq2 interacting with agricolae
Voter 15 months ago, voted more than 100 times.
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: Deseq2 error estimating size factors -- zeros in count matrix
Scholar 17 months ago, created an answer that has been accepted. For A: arrayQualityMetrics error: Error: Unknown parameters: cex.axis
Scholar 18 months ago, created an answer that has been accepted. For A: arrayQualityMetrics error: Error: Unknown parameters: cex.axis
Scholar 19 months ago, created an answer that has been accepted. For A: plotMA for unshrunken LFC in deseq2
Scholar 2.0 years ago, created an answer that has been accepted. For A: rounding issues using the VSN package
Scholar 2.1 years ago, created an answer that has been accepted. For A: rounding issues using the VSN package
Supporter 2.2 years ago, voted at least 25 times.
Scholar 2.6 years ago, created an answer that has been accepted. For A: arrayQualityMetrics: "All SVG style attribute must have length 1" and other erro
Centurion 2.9 years ago, created 100 posts.
Oracle 8.0 years ago, created more than 1,000 posts (questions + answers + comments).

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