HELP package
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Paul Hammer ▴ 220
@paul-hammer-2635
Last seen 10.3 years ago
hi folks, I know that the package HELP (http://www.bioconductor.org/packages/devel/bioc/html/HELP.html) is designed for R-2.8. But I have heard that it is also possible to install HELP under R-2.7 with a little trick. Is that right ? Is there any way to do this? thanks, paul
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@henrik-bengtsson-4333
Last seen 7 months ago
United States
Hi, On Tue, Aug 19, 2008 at 8:47 AM, Paul Hammer <paul.hammer at="" p-t-p.de=""> wrote: > hi folks, > > I know that the package HELP > (http://www.bioconductor.org/packages/devel/bioc/html/HELP.html) is designed > for R-2.8. But I have heard that it is also possible to install HELP under > R-2.7 with a little trick. Is that right ? Is there any way to do this? I've got a patched version of biocLite() that you can tell to fake the version number of R. Say you run R v2.7.1, then you can do (I'm sure I'm getting into trouble for making it this simple): > source("http://www.braju.com/R/hbLite.R"); > biocLite("HELP"); Running biocinstall version 2.2.10 with R version 2.7.1 Your version of R requires version 2.2 of BioConductor. Warning message: package 'HELP' is not available biocLite("HELP", rver="2.8.0"); Running biocinstall version 2.3.7 with R version 2.8.0 (under development) Your version of R requires version 2.3 of Bioconductor. trying URL 'http://bioconductor.org/packages/2.3/bioc/bin/windows/contrib/2.8/HE LP_0.99.2.zip' Content type 'application/zip' length 1103967 bytes (1.1 Mb) opened URL downloaded 1.1 Mb package 'HELP' successfully unpacked and MD5 sums checked Boring disclaimer: Note that if you do this, you are on your own and if you plan to report bugs etc to BioC about HELP (and dependent packages), then make sure to do your test on R v2.8.0 and not as above. The above trick is only intended to be used when you know it is safe to use it on R v2.7.1. as well. Please don't kill the messenger - nor the provider - for this one ;) /Henrik > > thanks, > paul > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor >
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Henrik Bengtsson schrieb: > Hi, > > On Tue, Aug 19, 2008 at 8:47 AM, Paul Hammer <paul.hammer@p-t-p.de> wrote: > >> hi folks, >> >> I know that the package HELP >> (http://www.bioconductor.org/packages/devel/bioc/html/HELP.html) is designed >> for R-2.8. But I have heard that it is also possible to install HELP under >> R-2.7 with a little trick. Is that right ? Is there any way to do this? >> > > I've got a patched version of biocLite() that you can tell to fake the > version number of R. Say you run R v2.7.1, then you can do (I'm sure > I'm getting into trouble for making it this simple): > > >> source("http://www.braju.com/R/hbLite.R"); >> biocLite("HELP"); >> > Running biocinstall version 2.2.10 with R version 2.7.1 > Your version of R requires version 2.2 of BioConductor. > Warning message: > package 'HELP' is not available > biocLite("HELP", rver="2.8.0"); > Running biocinstall version 2.3.7 with R version 2.8.0 (under development) > Your version of R requires version 2.3 of Bioconductor. > trying URL 'http://bioconductor.org/packages/2.3/bioc/bin/windows/contrib/2.8/HE > LP_0.99.2.zip' > Content type 'application/zip' length 1103967 bytes (1.1 Mb) > opened URL > downloaded 1.1 Mb > package 'HELP' successfully unpacked and MD5 sums checked > > Boring disclaimer: Note that if you do this, you are on your own and > if you plan to report bugs etc to BioC about HELP (and dependent > packages), then make sure to do your test on R v2.8.0 and not as > above. The above trick is only intended to be used when you know it > is safe to use it on R v2.7.1. as well. > > Please don't kill the messenger - nor the provider - for this one ;) > > /Henrik > > >> thanks, >> paul >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor@stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> >> thank you man :) that is really easy and it worked fine. goodnight paul [[alternative HTML version deleted]]
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