When making a cdf environment, I get the following error: Error in createPackage(packagename, destinationDir = path.expand(package.path), : unused argument (s) (force ...) This is due to the fact that make.cdf.environment() passes force=FALSE to createPackage(). This argument was removed from createPackage() somewhere between Biobase 1.3.22 and 1.3.29. Commenting it out fixed the problem. Best, Jim James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623

Hi James, thanks! The parameter "force" in createPackage was renamed to "unlink" a couple of weeks ago, see http://franz.stat.wisc.edu/cgi-bin/viewcvs.cgi/Rpacks/Biobase/R/create package.R.diff?r1=1.5&r2=1.6&cvsroot=Bioconductor to make it more consistent with the names of similar parameters of other functions. The bug in "make.cdf.env" is being repaired right now and will propagate to the web repository soon. Thanks again, Wolfgang ------------------------------------- Wolfgang Huber Division of Molecular Genome Analysis German Cancer Research Center Heidelberg, Germany Phone: +49 6221 424709 Fax: +49 6221 42524709 Http: www.dkfz.de/mga/whuber ------------------------------------- On Fri, 12 Sep 2003, James MacDonald wrote: > When making a cdf environment, I get the following error: > > Error in createPackage(packagename, destinationDir = > path.expand(package.path), : > unused argument (s) (force ...) > > This is due to the fact that make.cdf.environment() passes force=FALSE > to createPackage(). This argument was removed from createPackage() > somewhere between Biobase 1.3.22 and 1.3.29. Commenting it out fixed > the problem. > > Best, > > Jim > > > > James W. MacDonald > Affymetrix and cDNA Microarray Core > University of Michigan Cancer Center > 1500 E. Medical Center Drive > 7410 CCGC > Ann Arbor MI 48109 > 734-647-5623 > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor >