Entering edit mode
John Lande
▴
280
@john-lande-2357
Last seen 10.2 years ago
dear all,
I need to import data from ArrayExpress, and I am tring RMAGEML.
unluckly I retrive the following error during installation. what do I
miss?
is there any other package to andle ArrayExpress Data?
> install.packages("RMAGEML")
trying URL '
http://www.bioconductor.org/packages/2.2/bioc/src/contrib/RMAGEML_2.14
.0.tar.gz
'
Content type 'application/x-gzip' length 4912894 bytes (4.7 Mb)
opened URL
==================================================
downloaded 4.7 Mb
* Installing *source* package 'RMAGEML' ...
configure: creating ./config.status
config.status: creating src/Makevars
** libs
During startup - Warning messages:
1: Setting LC_CTYPE failed, using "C"
2: Setting LC_TIME failed, using "C"
3: Setting LC_MESSAGES failed, using "C"
4: Setting LC_PAPER failed, using "C"
5: Setting LC_MEASUREMENT failed, using "C"
gcc -std=gnu99 -I/usr/local/lib64/R/include -I/include
-I/include/linux
-I/usr/local/include -fpic -g -O2 -c rmageml.c -o rmageml.o
rmageml.c: In function 'updateMAGEML':
rmageml.c:599: warning: cast from pointer to integer of different size
gcc -std=gnu99 -shared -L/usr/local/lib64 -o RMAGEML.so rmageml.o
-L/jre/lib/amd64 -L/jre/lib/i386 -ljava -L/jre/lib/amd64/server
-L/jre/lib/i386/client -ljvm
/usr/bin/ld: cannot find -ljava
collect2: ld returned 1 exit status
make: *** [RMAGEML.so] Error 1
chmod: cannot access `/usr/local/lib64/R/library/RMAGEML/libs/*': No
such
file or directory
ERROR: compilation failed for package 'RMAGEML'
** Removing '/usr/local/lib64/R/library/RMAGEML'
The downloaded packages are in
/tmp/RtmpEZsArx/downloaded_packages
Updating HTML index of packages in '.Library'
Warning message:
In install.packages("RMAGEML") :
installation of package 'RMAGEML' had non-zero exit status
> sessionInfo()
R version 2.7.2 (2008-08-25)
x86_64-unknown-linux-gnu
locale:
C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] tools_2.7.2
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