Entering edit mode
Samuel Wuest
▴
330
@samuel-wuest-2821
Last seen 10.3 years ago
Hi all,
I have just installed R version 2.8.0 and the updated to the new
Bioconductor-version 2.3 packages. I have used SQLForge to create a
new
annotation package for the Arabidopsis Chip (using a custom-made
annotation
package); I have successfully installed the new package, but the
loading
requires a chrlengths-table, which does not exist for the Arabidopsis
base-level annotation database (as discussed in the thread
"Arabidopsis
chromosome location mappings").
So I got the following error:
>library(TinesATH1b.db)
Loading required package: DBI
Error in sqliteExecStatement(con, statement, bind.data) :
RS-DBI driver: (error in statement: no such table: chrlengths)
Error : .onLoad failed in 'loadNamespace' for 'TinesATH1b.db'
Error: package/namespace load failed for 'TinesATH1b.db'
Is there a way around the problem? Or is it necessary to include a
chrlengths-annotation in the Arabidopsis base-level package? Or is the
error
not really related to the missing chrlengths-table?
Thanks a million for further help!
Best wishes, Sam
> sessionInfo()
R version 2.8.0 (2008-10-20)
i386-apple-darwin8.11.1
locale:
en_IE.UTF-8/en_IE.UTF-8/C/C/en_IE.UTF-8/en_IE.UTF-8
attached base packages:
[1] tools stats graphics grDevices utils datasets
methods
base
other attached packages:
[1] RSQLite_0.7-1 DBI_0.2-4 AnnotationDbi_1.4.0
Biobase_2.2.0
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