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McGee, Monnie
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@mcgee-monnie-1108
Last seen 10.3 years ago
Dear BioC Group,
I am trying to load Rgraphviz but I keep receiving an error. I have
installed graphviz 2.2. I searched the mailing list archives, and, as
far as I can tell, no error like this has appeared. I tried loading
Rgraphviz on two different computers running two different versions of
R and BioC and received the same error. Relevant information follows.
> sessionInfo()
R version 2.8.0 (2008-10-20)
powerpc-apple-darwin8.11.1
locale:
C
attached base packages:
[1] grid tools stats graphics grDevices utils
datasets methods base
other attached packages:
[1] graph_1.20.0 affy_1.20.0 Biobase_2.2.1
loaded via a namespace (and not attached):
[1] affyio_1.10.1 cluster_1.11.11 preprocessCore_1.4.0
> library(Rgraphviz)
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared library '/Library/Frameworks/R.framework/Resou
rces/library/Rgraphviz/libs/ppc/Rgraphviz.so':
dlopen(/Library/Frameworks/R.framework/Resources/library/Rgraphviz/l
ibs/ppc/Rgraphviz.so, 6): Library not loaded:
/usr/local/lib/libgvc.3.dylib
Referenced from: /Library/Frameworks/R.framework/Resources/library/R
graphviz/libs/ppc/Rgraphviz.so
Reason: image not found
Error : .onLoad failed in 'loadNamespace' for 'Rgraphviz'
Error: package/namespace load failed for 'Rgraphviz'
I also tried loading Rgraphviz on an Intel-based Power PC running R
2.7.2 and received the same error:
> library(Rgraphviz)
Loading required package: grid
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared library '/Library/Frameworks/R.framework/Resou
rces/library/Rgraphviz/libs/i386/Rgraphviz.so':
dlopen(/Library/Frameworks/R.framework/Resources/library/Rgraphviz/l
ibs/i386/Rgraphviz.so, 6): Library not loaded:
/usr/local/lib/libgvc.3.dylib
Referenced from: /Library/Frameworks/R.framework/Resources/library/R
graphviz/libs/i386/Rgraphviz.so
Reason: image not found
Error : .onLoad failed in 'loadNamespace' for 'Rgraphviz'
Error: package/namespace load failed for 'Rgraphviz'
> sessionInfo()
R version 2.7.2 (2008-08-25)
i386-apple-darwin8.11.1
locale:
C
attached base packages:
[1] grid splines tools stats graphics grDevices utils
datasets
[9] methods base
other attached packages:
[1] humanCHRLOC_2.1.4 Category_2.6.0 graph_1.18.1
KEGG.db_2.2.0
[5] hgu95av2.db_2.2.0 genefilter_1.20.0 survival_2.34-1
ALL_1.4.4
[9] GSEABase_1.2.2 annotate_1.18.0 xtable_1.5-3
AnnotationDbi_1.2.2
[13] RSQLite_0.7-0 DBI_0.2-4 Biobase_2.0.1
loaded via a namespace (and not attached):
[1] RBGL_1.16.0 XML_1.96-0 cluster_1.11.11
Thanks for your help,
Monnie